Basic Information
Locus ID:
CH02.2959
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Cytokinin-activating enzyme working in the direct activation pathway. Phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH02 | 34863447 | 34870461 | - | CH02.2959 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.48 | 31,678.37 Da | 32.94 | 89.19 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF102405 | MCP/YpsA-like | 77 | 128 | 1.01E-13 | - |
| Gene3D | G3DSA:3.40.50.450 | - | 76 | 156 | 3.5E-15 | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G06300.1 | Putative lysine decarboxylase family protein. | 4.71E-10 |
| RefSeq | XP_039783055.1 | probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG4 [Panicum virgatum] | 4.64E-23 |
| Q851C7 | Probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG4 OS=Oryza sativa subsp. japonica OX=39947 GN=LOGL4 PE=3 SV=1 | 2.66E-20 | |
| TrEMBL | A0A8T0N9W5 | Cytokinin riboside 5'-monophosphate phosphoribohydrolase OS=Panicum virgatum OX=38727 GN=PVAP13_9KG039900 PE=3 SV=1 | 1.05E-21 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 23 | AH03.1339, AH04.1181, AH05.1634, AH05.2682, AH05.3161 ... |
| Poaceae | Oryza coarctata | 1 | Oco01G029890 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g25690.1 |