Basic Information
Locus ID:
CH02.2897
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
LRR-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH02 | 34436804 | 34439692 | + | CH02.2897 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.54 | 91,890.10 Da | 52.39 | 88.86 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 6 | 43 | 6.4E-8 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 5 | 43 | 4.32E-10 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 168 | 774 | 1.49E-7 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 155 | 511 | 1.9E-9 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 2 | 46 | 3.4E-6 | - |
| SMART | SM00256 | fbox_2 | 10 | 51 | 9.0E-4 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 4 | 57 | 9.815402 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G38392.1 | - | 6.53E-7 |
| RefSeq | XP_039851727.1 | uncharacterized protein LOC120710124 [Panicum virgatum] | 1.06E-76 |
| TrEMBL | A0A8T0SZ27 | F-box domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_5KG588400 PE=4 SV=1 | 5.84E-296 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology