Basic Information
Locus ID:
CH02.2789
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
transposition, RNA-mediated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH02 | 33175241 | 33190550 | + | CH02.2789 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.32 | 266,935.28 Da | 39.03 | 81.88 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00303 | retropepsin_like | 1554 | 1631 | 5.96195E-6 | - |
| CDD | cd01647 | RT_LTR | 1749 | 1929 | 1.23185E-75 | - |
| Pfam | PF17919 | RNase H-like domain found in reverse transcriptase | 1969 | 2029 | 4.6E-12 | IPR041577 |
| Pfam | PF00078 | Reverse transcriptase (RNA-dependent DNA polymerase) | 1767 | 1929 | 7.0E-18 | IPR000477 |
| Pfam | PF13456 | Reverse transcriptase-like | 2053 | 2120 | 8.1E-12 | IPR002156 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 1709 | 2110 | 3.34E-101 | IPR043502 |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 1535 | 1646 | 1.5E-10 | IPR021109 |
| Gene3D | G3DSA:3.30.70.270 | - | 1792 | 1929 | 5.9E-57 | IPR043128 |
| Gene3D | G3DSA:3.30.420.10 | - | 2045 | 2130 | 1.2E-12 | IPR036397 |
| Gene3D | G3DSA:3.40.50.720 | - | 128 | 243 | 5.3E-8 | - |
| Gene3D | G3DSA:3.10.10.10 | HIV Type 1 Reverse Transcriptase, subunit A, domain 1 | 1710 | 1854 | 5.9E-57 | - |
| Gene3D | G3DSA:3.30.70.270 | - | 1962 | 1998 | 1.9E-5 | IPR043128 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1169 | 1189 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2154 | 2190 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2154 | 2184 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1169 | 1188 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 849 | 875 | - | - |
| Coils | Coil | Coil | 1394 | 1414 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G39080.1 | NAD(P)-binding Rossmann-fold superfamily protein. | 2.54E-72 |
| RefSeq | XP_052161258.1 | uncharacterized protein LOC127778677 isoform X1 [Oryza glaberrima] | 1.73E-187 |
| P03370 | Gag-Pol polyprotein OS=Maedi visna virus (strain 1514) OX=11742 GN=pol PE=1 SV=2 | 3.48E-6 | |
| TrEMBL | L0P3P1 | PH01B001I13.4 protein OS=Phyllostachys edulis OX=38705 GN=PH01B001I13.4 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 30 | AH02.2831, AH03.661, AH04.1103, AH04.216, AH04.458, BH01.627 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_053643, gene-QYE76_056610 |