Basic Information
Locus ID:
CH02.274
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH02 | 2280192 | 2280944 | - | CH02.274 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.73 | 25,784.97 Da | 60.02 | 80.44 | 0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 137 | 180 | 1.70784E-20 | - |
| Pfam | PF13639 | Ring finger domain | 137 | 180 | 1.7E-15 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 134 | 186 | 4.01E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 115 | 188 | 5.6E-22 | IPR013083 |
| SMART | SM01197 | FANCL_C_2 | 134 | 188 | 0.008 | - |
| SMART | SM00184 | ring_2 | 138 | 179 | 4.0E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 138 | 180 | 13.123657 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G47560.1 | RING/U-box superfamily protein. | 2.04E-18 |
| RefSeq | XP_025819002.1 | E3 ubiquitin-protein ligase EL5-like [Panicum hallii] | 3.04E-80 |
| O22255 | RING-H2 finger protein ATL64 OS=Arabidopsis thaliana OX=3702 GN=ATL64 PE=2 SV=1 | 1.99E-17 | |
| TrEMBL | A0A3L6SMH8 | RING-type E3 ubiquitin transferase OS=Panicum miliaceum OX=4540 GN=C2845_PM07G38650 PE=4 SV=1 | 3.33E-80 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH02.210, BH02.219, CH02.274 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0002090, gene-QOZ80_1BG0050550 |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.3HG0245590.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 5 | gene-QYE76_018512, gene-QYE76_051213, gene-QYE76_051214 ... |
| Poaceae | Oryza coarctata | 1 | Oco02G004990 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g11520.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_03G019700, gene-BS78_03G019800 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0204999, Pt_Chr0205104 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr02G028210, Chr05G005930 |
| Poaceae | Thinopyrum elongatum | 2 | Tel3E01G248600, Tel3E01G249200 |
| Poaceae | Triticum dicoccoides | 6 | gene_TRIDC3AG018440, gene_TRIDC3AG018460 ... |
| Poaceae | Triticum aestivum | 9 | TraesCS3A02G139900.1.cds1, TraesCS3A02G140000.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb120050_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-24351 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g9569 |