Basic Information
Locus ID:
CH02.2672
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
ATPase family associated with various cellular activities (AAA)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH02 | 31680079 | 31695542 | + | CH02.2672 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.49 | 86,845.51 Da | 37.96 | 85.47 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00009 | AAA | 362 | 495 | 1.43236E-22 | - |
| Pfam | PF17862 | AAA+ lid domain | 516 | 560 | 6.4E-12 | IPR041569 |
| Pfam | PF00004 | ATPase family associated with various cellular activities (AAA) | 364 | 494 | 4.4E-39 | IPR003959 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 323 | 556 | 2.84E-56 | IPR027417 |
| Gene3D | G3DSA:1.10.8.60 | - | 497 | 628 | 4.7E-95 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 323 | 632 | 4.7E-95 | IPR027417 |
| SMART | SM00382 | AAA_5 | 360 | 497 | 6.1E-19 | IPR003593 |
| ProSitePatterns | PS00674 | AAA-protein family signature. | 467 | 486 | - | IPR003960 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 551 | 611 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 551 | 605 | - | - |
| Coils | Coil | Coil | 546 | 567 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G52882.1 | P-loop containing nucleoside triphosphate hydrolases superfamily protein. | 7.86E-208 |
| RefSeq | XP_034594671.1 | ribosome biogenesis ATPase RIX7-like [Setaria viridis] | 0 |
| Q6NW58 | Spastin OS=Danio rerio OX=7955 GN=spast PE=2 SV=2 | 9.26E-64 | |
| TrEMBL | A0A4U6UK68 | AAA domain-containing protein OS=Setaria viridis OX=4556 GN=SEVIR_5G239100v2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology