Basic Information
Locus ID:
CH02.2581
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH02 | 30600628 | 30604748 | - | CH02.2581 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.72 | 46,527.79 Da | 32.97 | 89.03 | 0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 171 | 222 | 3.25484E-17 | - |
| Pfam | PF12906 | RING-variant domain | 171 | 221 | 1.3E-9 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 169 | 226 | 3.88E-11 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 158 | 234 | 1.9E-16 | IPR013083 |
| SMART | SM00744 | ringv_2 | 170 | 222 | 4.7E-17 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 163 | 228 | 19.958511 | IPR011016 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G11020.1 | RING/FYVE/PHD zinc finger superfamily protein. | 6.26E-103 |
| RefSeq | XP_025815414.1 | uncharacterized protein LOC112892474 [Panicum hallii] | 5.31E-136 |
| TrEMBL | A0A2T7DJX6 | RING-CH-type domain-containing protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_5G246800 PE=4 SV=1 | 2.29E-140 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology