Basic Information
Locus ID:
CH02.2528
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
EF-hand domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH02 | 30105571 | 30106278 | - | CH02.2528 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.85 | 24,717.81 Da | 41.77 | 83.79 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 161 | 223 | 5.93924E-21 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 80 | 140 | 3.0E-8 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 160 | 222 | 1.6E-15 | IPR002048 |
| SUPERFAMILY | SSF47473 | EF-hand | 75 | 222 | 9.16E-38 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 74 | 143 | 1.0E-16 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 155 | 229 | 3.7E-23 | - |
| SMART | SM00054 | efh_1 | 81 | 109 | 0.097 | IPR002048 |
| SMART | SM00054 | efh_1 | 197 | 225 | 1.7E-7 | IPR002048 |
| SMART | SM00054 | efh_1 | 118 | 146 | 0.041 | IPR002048 |
| SMART | SM00054 | efh_1 | 161 | 189 | 6.2E-5 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 114 | 149 | 10.942794 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 157 | 192 | 15.238686 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 193 | 228 | 13.564962 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 77 | 112 | 12.755995 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 90 | 102 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 170 | 182 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 206 | 218 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 127 | 139 | - | IPR018247 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 74 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G25600.1 | Calcium-binding EF-hand family protein. | 1.09E-34 |
| RefSeq | XP_022682297.1 | probable calcium-binding protein CML14 [Setaria italica] | 2.51E-72 |
| Q5ZD81 | Probable calcium-binding protein CML12 OS=Oryza sativa subsp. japonica OX=39947 GN=CML12 PE=2 SV=1 | 3.6E-41 | |
| TrEMBL | A0A835B2V4 | Calcium-binding protein CML15 OS=Digitaria exilis OX=1010633 GN=HU200_050118 PE=4 SV=1 | 1.97E-72 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology