Basic Information
Locus ID:
CH02.2526
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH02 | 30087846 | 30090542 | + | CH02.2526 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.48 | 76,932.42 Da | 46.80 | 74.81 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 272 | 309 | 1.8E-5 | IPR001810 |
| Pfam | PF03106 | WRKY DNA -binding domain | 77 | 118 | 1.5E-11 | IPR003657 |
| SUPERFAMILY | SSF81383 | F-box domain | 265 | 326 | 7.19E-9 | IPR036047 |
| SUPERFAMILY | SSF118290 | WRKY DNA-binding domain | 77 | 121 | 1.96E-12 | IPR036576 |
| Gene3D | G3DSA:2.20.25.80 | WRKY domain | 69 | 122 | 1.1E-12 | IPR036576 |
| Gene3D | G3DSA:1.20.1280.50 | - | 270 | 308 | 5.6E-6 | - |
| SMART | SM00774 | WRKY_cls | 76 | 120 | 3.3E-8 | IPR003657 |
| ProSiteProfiles | PS50811 | WRKY domain profile. | 81 | 121 | 19.542631 | IPR003657 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 131 | 153 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 212 | 231 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 131 | 151 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G01250.1 | WRKY family transcription factor. member of WRKY Transcription Factor; Group II-e | 1.61E-20 |
| RefSeq | XP_039848141.1 | uncharacterized protein LOC120707331 [Panicum virgatum] | 3.25E-218 |
| O04609 | WRKY transcription factor 22 OS=Arabidopsis thaliana OX=3702 GN=WRKY22 PE=2 SV=1 | 1.57E-19 | |
| TrEMBL | A0A3L6R0P2 | F-box domain-containing protein OS=Panicum miliaceum OX=4540 GN=C2845_PM08G18320 PE=4 SV=1 | 8.88E-224 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology