Basic Information
Locus ID:
CH02.2490
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Protein of unknown function, DUF573
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH02 | 29558817 | 29562036 | + | CH02.2490 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.42 | 90,376.80 Da | 67.52 | 55.54 | -0.81 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16504 | RING-HC_COP1 | 675 | 704 | 8.0775E-15 | - |
| Pfam | PF04504 | Protein of unknown function, DUF573 | 391 | 481 | 8.1E-19 | IPR007592 |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 678 | 706 | 6.4E-8 | IPR018957 |
| SUPERFAMILY | SSF57850 | RING/U-box | 672 | 709 | 8.84E-11 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 656 | 774 | 1.3E-9 | IPR013083 |
| SMART | SM00184 | ring_2 | 678 | 833 | 8.3E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 678 | 702 | 9.022323 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 693 | 702 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 211 | 249 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 286 | 304 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 830 | 847 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 192 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 74 | 97 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 770 | 847 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 270 | 397 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 308 | 322 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32950.1 | Transducin/WD40 repeat-like superfamily protein. Represses photomorphogenesis and induces skotomorphogenesis in the dark. Contains a ring finger zinc-binding motif, a coiled-coil domain, and several WD-40 repeats, similar to G-beta proteins. The C-terminus has homology to TAFII80, a subunit of the TFIID component of the RNA polymerase II of Drosophila. Nuclear localization in the dark and cytoplasmic in the light. | 4.11E-15 |
| RefSeq | XP_004954058.2 | uncharacterized protein LOC101755591 [Setaria italica] | 9.78E-85 |
| P43254 | E3 ubiquitin-protein ligase COP1 OS=Arabidopsis thaliana OX=3702 GN=COP1 PE=1 SV=2 | 4.08E-14 | |
| TrEMBL | A0A1E5VAN9 | Myb_DNA-bind_3 domain-containing protein OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0016895 PE=3 SV=1 | 3.55E-85 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology