Basic Information
Locus ID:
CH02.2467
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Hypoxia induced protein conserved region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH02 | 29373997 | 29375991 | + | CH02.2467 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 12.00 | 49,816.64 Da | 110.57 | 49.15 | -1.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04588 | Hypoxia induced protein conserved region | 366 | 416 | 2.4E-9 | IPR007667 |
| ProSiteProfiles | PS51503 | HIG1 domain profile. | 341 | 433 | 18.156149 | IPR007667 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 55 | 89 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 286 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 90 | 105 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 127 | 142 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 295 | 314 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 17 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G27760.1 | Hypoxia-responsive family protein. | 1.23E-15 |
| RefSeq | XP_039833112.1 | uncharacterized protein LOC120693986 isoform X2 [Panicum virgatum] | 4.31E-59 |
| TrEMBL | A0A2T7CJC5 | HIG1 domain-containing protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_8G008200 PE=4 SV=1 | 7.44E-60 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology