Basic Information
Locus ID:
CH02.2424
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH02 | 28880285 | 28889461 | + | CH02.2424 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.99 | 132,905.05 Da | 48.41 | 91.55 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd13132 | MATE_eukaryotic | 472 | 887 | 9.90966E-96 | IPR045069 |
| Pfam | PF13639 | Ring finger domain | 339 | 381 | 2.2E-10 | IPR001841 |
| Pfam | PF01554 | MatE | 482 | 643 | 9.4E-29 | IPR002528 |
| SUPERFAMILY | SSF57850 | RING/U-box | 335 | 387 | 2.4E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 336 | 384 | 1.5E-15 | IPR013083 |
| Gene3D | G3DSA:2.60.120.650 | Cupin | 1 | 109 | 5.2E-25 | - |
| SMART | SM00184 | ring_2 | 340 | 380 | 1.8E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 340 | 381 | 12.002429 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 935 | 954 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 810 | 834 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 905 | 922 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 892 | 977 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 286 | 320 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 291 | 305 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 956 | 977 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G58340.1 | MATE efflux family protein. | 1.63E-117 |
| RefSeq | NP_001354899.1 | Protein DETOXIFICATION 48 [Zea mays] | 3.72E-222 |
| Q9SLV0 | Protein DETOXIFICATION 48 OS=Arabidopsis thaliana OX=3702 GN=DTX48 PE=2 SV=1 | 1.57E-116 | |
| TrEMBL | A0A804LGL0 | Protein DETOXIFICATION OS=Zea mays OX=4577 PE=3 SV=1 | 8.42E-221 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
No orthogroup found for CH02.2424.