Basic Information
Locus ID:
CH02.2296
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Salt stress response/antifungal
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH02 | 27246580 | 27251048 | - | CH02.2296 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.68 | 40,516.11 Da | 31.85 | 73.20 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01657 | Salt stress response/antifungal | 174 | 268 | 2.3E-9 | IPR002902 |
| Pfam | PF01657 | Salt stress response/antifungal | 50 | 140 | 5.0E-6 | IPR002902 |
| Gene3D | G3DSA:3.30.430.20 | - | 39 | 144 | 1.9E-8 | IPR038408 |
| Gene3D | G3DSA:3.30.430.20 | - | 158 | 271 | 7.6E-18 | IPR038408 |
| ProSiteProfiles | PS51473 | Gnk2-homologous domain profile. | 158 | 271 | 15.384494 | IPR002902 |
| ProSiteProfiles | PS51473 | Gnk2-homologous domain profile. | 37 | 144 | 11.627872 | IPR002902 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G11490.1 | cysteine-rich RLK (RECEPTOR-like protein kinase) 33. Encodes a cysteine-rich receptor-like protein kinase. | 1.72E-7 |
| RefSeq | XP_034597894.1 | cysteine-rich receptor-like protein kinase 25 [Setaria viridis] | 6.43E-111 |
| Q0D5R2 | Cysteine-rich receptor-like protein kinase 10 OS=Oryza sativa subsp. japonica OX=39947 GN=CRK10 PE=2 SV=1 | 1.92E-24 | |
| TrEMBL | K3XS88 | Gnk2-homologous domain-containing protein OS=Setaria italica OX=4555 PE=4 SV=1 | 5.41E-138 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH02.2073, CH02.2296, CH07.185 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0627900.1 |
| Poaceae | Oryza coarctata | 2 | Oco01G009710, Oco02G010060 |
| Poaceae | Oryza sativa | 3 | LOC_Os01g23970.1, LOC_Os01g38850.1, LOC_Os01g38910.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G157100 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr02G017310, Chr03G009290, Chr05G016650 |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G685700 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC6AG056390, gene_TRIDC6AG056400 ... |
| Poaceae | Triticum aestivum | 9 | TraesCS3B02G231200.1, TraesCS6A02G378900.1 ... |
| Poaceae | Zoysia japonica | 6 | nbis-gene-21510, nbis-gene-29462, nbis-gene-29465 ... |
| Poaceae | Zoysia macrostachya | 5 | Zma_g10423, Zma_g7034, Zma_g8087, Zma_g8088, Zma_g8089 |