Basic Information
Locus ID:
CH02.2238
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
DEAD-box ATP-dependent RNA helicase
Maps and Mapping Data
| Chromosome/Scaffold | Start | End | Strand | ID |
|---|---|---|---|---|
| CH02 | 26558986 | 26563575 | - | CH02.2238 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.97 | 87,599.32 Da | 70.59 | 59.66 | -0.98 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 375 | 504 | 4.12795E-63 | - |
| CDD | cd00201 | WW | 23 | 54 | 2.81177E-4 | IPR001202 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 386 | 495 | 5.3E-34 | IPR001650 |
| Pfam | PF00397 | WW domain | 22 | 52 | 3.3E-6 | IPR001202 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 180 | 349 | 2.3E-49 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 227 | 513 | 9.78E-76 | IPR027417 |
| SUPERFAMILY | SSF51045 | WW domain | 14 | 55 | 1.63E-8 | IPR036020 |
| Gene3D | G3DSA:2.20.70.10 | - | 16 | 62 | 8.1E-6 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 130 | 366 | 2.1E-88 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 367 | 537 | 3.9E-59 | IPR027417 |
| SMART | SM00490 | helicmild6 | 415 | 495 | 5.2E-35 | IPR001650 |
| SMART | SM00487 | ultradead3 | 175 | 378 | 1.5E-62 | IPR014001 |
| SMART | SM00456 | ww_5 | 21 | 54 | 1.5E-5 | IPR001202 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 156 | 184 | 11.504468 | IPR014014 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 20 | 54 | 11.152 | IPR001202 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 390 | 534 | 25.835522 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 187 | 361 | 30.333256 | IPR014001 |
| ProSitePatterns | PS01159 | WW/rsp5/WWP domain signature. | 26 | 52 | - | IPR001202 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 307 | 315 | - | IPR000629 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 48 | 134 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 667 | 709 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 529 | 790 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 711 | 733 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 548 | 610 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 55 | 71 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 27 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 72 | 116 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 611 | 642 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G01540.1 | DEAD box RNA helicase 1. RNA HELICASE DRH1 | 2.01E-256 |
| RefSeq | XP_025819517.1 | DEAD-box ATP-dependent RNA helicase 40-like isoform X1 [Panicum hallii] | 0 |
| Q5JKF2 | DEAD-box ATP-dependent RNA helicase 40 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0549400 PE=2 SV=2 | 0 | |
| TrEMBL | A0A811PFH4 | DEAD-box ATP-dependent RNA helicase 14 OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS25553 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology