Basic Information
Locus ID:
CH02.2153
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Domain of unknown function (DUF3403)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH02 | 25413112 | 25416758 | - | CH02.2153 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.56 | 75,880.51 Da | 40.10 | 86.75 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 373 | 639 | 2.60573E-95 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 370 | 637 | 7.8E-48 | IPR001245 |
| Pfam | PF01657 | Salt stress response/antifungal | 180 | 260 | 4.6E-10 | IPR002902 |
| Pfam | PF01657 | Salt stress response/antifungal | 36 | 131 | 8.9E-15 | IPR002902 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 348 | 640 | 8.12E-81 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 443 | 644 | 5.4E-60 | - |
| Gene3D | G3DSA:3.30.430.20 | - | 162 | 263 | 3.8E-20 | IPR038408 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 328 | 442 | 8.7E-37 | - |
| Gene3D | G3DSA:3.30.430.20 | - | 31 | 137 | 2.2E-17 | IPR038408 |
| SMART | SM00220 | serkin_6 | 367 | 641 | 9.5E-32 | IPR000719 |
| ProSiteProfiles | PS51473 | Gnk2-homologous domain profile. | 34 | 137 | 16.633684 | IPR002902 |
| ProSiteProfiles | PS51473 | Gnk2-homologous domain profile. | 156 | 263 | 17.69278 | IPR002902 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 367 | 654 | 38.322235 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 489 | 501 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G23280.1 | cysteine-rich RLK (RECEPTOR-like protein kinase) 20. Encodes a cysteine-rich receptor-like protein kinase. | 9.72E-149 |
| RefSeq | XP_012701442.1 | cysteine-rich receptor-like protein kinase 15 [Setaria italica] | 0 |
| O65479 | Putative cysteine-rich receptor-like protein kinase 20 OS=Arabidopsis thaliana OX=3702 GN=CRK20 PE=2 SV=2 | 9.38E-148 | |
| TrEMBL | A0A368R6P0 | Protein kinase domain-containing protein OS=Setaria italica OX=4555 GN=SETIT_5G190000v2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 2 | BH02.1996, CH02.2153 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0019950, gene-QOZ80_1BG0069640 |
| Poaceae | Oryza coarctata | 1 | Oco01G012050 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr24G009140 |