Basic Information
Locus ID:
CH02.2138
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
RING-type zinc-finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH02 | 25192827 | 25193567 | - | CH02.2138 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.35 | 26,691.23 Da | 44.43 | 75.45 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 178 | 224 | 7.3E-10 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 175 | 227 | 3.76E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 155 | 230 | 1.9E-16 | IPR013083 |
| SMART | SM00184 | ring_2 | 179 | 223 | 2.2E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 179 | 224 | 12.40076 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08139.1 | RING/U-box superfamily protein. | 1.08E-7 |
| RefSeq | XP_012701441.1 | uncharacterized protein LOC105914405 [Setaria italica] | 4.62E-148 |
| Q3T0W3 | E3 ubiquitin-protein ligase RNF181 OS=Bos taurus OX=9913 GN=RNF181 PE=2 SV=1 | 3.45E-8 | |
| TrEMBL | K3XRD2 | RING-type domain-containing protein OS=Setaria italica OX=4555 GN=105914405 PE=4 SV=1 | 1.05E-146 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 2 | AH02.1925, CH02.2138 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0535530, gene-QOZ80_6AG0535550 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0344770.1.CDS1 |
| Poaceae | Lolium multiflorum | 5 | gene-QYE76_000907, gene-QYE76_009970, gene-QYE76_042560 ... |
| Poaceae | Oryza coarctata | 1 | Oco01G015310 |
| Poaceae | Oryza sativa | 3 | LOC_Os01g35100.1, LOC_Os01g35120.1, LOC_Os01g44240.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G173700 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0403599, Pt_Chr0403600, Pt_Chr0404536, Pt_Chr0404560 |
| Poaceae | Thinopyrum elongatum | 2 | Tel3E01G878300, Tel5E01G877500 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC3AG014990, gene_TRIDC4BG014250 ... |
| Poaceae | Triticum aestivum | 11 | TraesCS3A02G521400.1.cds1, TraesCS3B02G139400.1.cds1 ... |