Basic Information
Locus ID:
CH02.2093
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
ABC transporter transmembrane region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH02 | 24415091 | 24420900 | - | CH02.2093 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.23 | 162,584.09 Da | 39.70 | 108.73 | 0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03250 | ABCC_MRP_domain1 | 587 | 794 | 1.04838E-96 | - |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 270 | 557 | 2.80202E-90 | IPR044746 |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 888 | 1178 | 1.44343E-70 | IPR044726 |
| CDD | cd03244 | ABCC_MRP_domain2 | 1201 | 1421 | 3.99084E-117 | - |
| Pfam | PF00664 | ABC transporter transmembrane region | 269 | 536 | 2.7E-23 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 892 | 1129 | 8.9E-24 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 616 | 746 | 5.9E-16 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 1220 | 1368 | 5.2E-30 | IPR003439 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1193 | 1428 | 3.03E-66 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 890 | 1185 | 6.67E-46 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 613 | 808 | 8.33E-51 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 262 | 562 | 9.94E-30 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 241 | 566 | 8.9E-44 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 1186 | 1440 | 4.6E-79 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 606 | 848 | 1.7E-65 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 857 | 1184 | 1.5E-52 | IPR036640 |
| SMART | SM00382 | AAA_5 | 620 | 794 | 2.8E-12 | IPR003593 |
| SMART | SM00382 | AAA_5 | 1229 | 1414 | 4.9E-12 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 890 | 1166 | 33.50457 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 587 | 817 | 19.814714 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1203 | 1437 | 17.353743 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 269 | 549 | 30.776062 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 719 | 733 | - | IPR017871 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04120.1 | multidrug resistance-associated protein 5. encodes a high-affinity inositol hexakisphosphate transporter that plays a role in guard cell signaling and phytate storage. It is a member of MRP subfamily / ABC transporter subfamily C. | 0 |
| RefSeq | XP_025814508.1 | putative ABC transporter C family member 15 isoform X1 [Panicum hallii] | 0 |
| Q7GB25 | ABC transporter C family member 5 OS=Arabidopsis thaliana OX=3702 GN=ABCC5 PE=2 SV=2 | 0 | |
| TrEMBL | A0A2S3HVF9 | ABC transporter C family member 15 OS=Panicum hallii OX=206008 GN=PAHAL_5G302000 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology