Basic Information
Locus ID:
CH02.2087
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
ABC transporter transmembrane region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH02 | 24358139 | 24364009 | - | CH02.2087 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.02 | 154,971.02 Da | 37.53 | 109.18 | 0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03244 | ABCC_MRP_domain2 | 1133 | 1356 | 2.20004E-116 | - |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 269 | 556 | 9.7663E-91 | IPR044746 |
| CDD | cd03250 | ABCC_MRP_domain1 | 586 | 793 | 6.57546E-96 | - |
| Pfam | PF00005 | ABC transporter | 615 | 745 | 5.7E-16 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 915 | 1062 | 1.8E-10 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 268 | 535 | 8.3E-25 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 1152 | 1303 | 1.3E-28 | IPR003439 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 888 | 1117 | 6.93E-29 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 262 | 560 | 7.85E-29 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 613 | 807 | 8.44E-51 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1126 | 1363 | 2.27E-64 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 605 | 843 | 9.7E-65 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1118 | 1375 | 1.2E-76 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 856 | 1116 | 1.5E-31 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 258 | 565 | 9.9E-43 | IPR036640 |
| SMART | SM00382 | AAA_5 | 1161 | 1349 | 1.8E-11 | IPR003593 |
| SMART | SM00382 | AAA_5 | 619 | 801 | 8.5E-13 | IPR003593 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 595 | 816 | 20.214872 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 268 | 548 | 30.810287 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 917 | 1098 | 20.81843 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1135 | 1372 | 16.620119 | IPR003439 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 718 | 732 | - | IPR017871 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_034596572.1 | putative ABC transporter C family member 15 [Setaria viridis] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A4U6UH86 | ABC transporter C family member 15 OS=Setaria viridis OX=4556 GN=SEVIR_5G186700v2 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology