Basic Information
Locus ID:
CH02.2021
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Prokaryotic RING finger family 4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH02 | 22886846 | 22889650 | - | CH02.2021 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.41 | 33,002.89 Da | 49.26 | 79.61 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16789 | mRING-HC-C3HC5_MGRN1_like---blasttree | 243 | 283 | 4.67651E-28 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 242 | 286 | 2.3E-16 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 243 | 287 | 2.36E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 227 | 293 | 6.2E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 244 | 282 | 1.5E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 244 | 283 | 11.589345 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G53410.1 | RING/U-box superfamily protein. | 1.8E-80 |
| RefSeq | XP_039811540.1 | probable E3 ubiquitin-protein ligase LUL2 [Panicum virgatum] | 1.6E-189 |
| Q9LFH6 | Probable E3 ubiquitin-protein ligase LUL2 OS=Arabidopsis thaliana OX=3702 GN=LUL2 PE=2 SV=1 | 1.73E-79 | |
| TrEMBL | A0A8T0RWD4 | RING-type E3 ubiquitin transferase OS=Panicum virgatum OX=38727 GN=PVAP13_5NG353600 PE=3 SV=1 | 3.62E-188 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology