Basic Information
Locus ID:
CH02.1952
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
USP8 dimerisation domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH02 | 20645154 | 20651144 | - | CH02.1952 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.47 | 57,109.34 Da | 49.87 | 84.44 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08066 | MPN_AMSH_like | 335 | 512 | 3.33805E-105 | IPR044098 |
| Pfam | PF08969 | USP8 dimerisation domain | 15 | 117 | 1.3E-14 | IPR015063 |
| Pfam | PF01398 | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 336 | 439 | 5.1E-15 | IPR000555 |
| SUPERFAMILY | SSF102712 | JAB1/MPN domain | 338 | 468 | 2.62E-18 | - |
| SUPERFAMILY | SSF140856 | USP8 N-terminal domain-like | 15 | 126 | 3.53E-7 | - |
| Gene3D | G3DSA:1.20.58.80 | - | 5 | 127 | 6.1E-31 | - |
| Gene3D | G3DSA:3.40.140.10 | Cytidine Deaminase, domain 2 | 323 | 514 | 2.8E-69 | - |
| SMART | SM00232 | pad1_6 | 336 | 465 | 3.5E-9 | IPR000555 |
| ProSiteProfiles | PS50249 | MPN domain profile. | 337 | 468 | 24.896235 | IPR037518 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48790.1 | associated molecule with the SH3 domain of STAM 1. | 7.71E-138 |
| RefSeq | XP_034597004.1 | AMSH-like ubiquitin thioesterase 3 isoform X2 [Setaria viridis] | 0 |
| Q5PNU3 | AMSH-like ubiquitin thioesterase 3 OS=Arabidopsis thaliana OX=3702 GN=AMSH3 PE=1 SV=2 | 1.8E-156 | |
| TrEMBL | A0A4U6UIS8 | MPN domain-containing protein OS=Setaria viridis OX=4556 GN=SEVIR_5G179300v2 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology