Basic Information
Locus ID:
CH02.1876
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Epidermal growth factor-like domain.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH02 | 18763681 | 18767361 | - | CH02.1876 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.49 | 105,089.27 Da | 37.46 | 83.50 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00054 | EGF_CA | 481 | 510 | 3.72771E-5 | - |
| CDD | cd14066 | STKc_IRAK | 611 | 879 | 8.41939E-87 | - |
| Pfam | PF00069 | Protein kinase domain | 607 | 872 | 7.0E-45 | IPR000719 |
| Pfam | PF13947 | Wall-associated receptor kinase galacturonan-binding | 322 | 375 | 5.8E-10 | IPR025287 |
| Pfam | PF13947 | Wall-associated receptor kinase galacturonan-binding | 35 | 74 | 2.9E-11 | IPR025287 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 588 | 876 | 1.07E-76 | IPR011009 |
| SUPERFAMILY | SSF57184 | Growth factor receptor domain | 427 | 521 | 2.04E-9 | IPR009030 |
| Gene3D | G3DSA:2.10.25.10 | Laminin | 440 | 517 | 1.0E-10 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 580 | 680 | 4.9E-30 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 681 | 900 | 1.3E-54 | - |
| SMART | SM00181 | egf_5 | 430 | 480 | 22.0 | IPR000742 |
| SMART | SM00181 | egf_5 | 264 | 310 | 59.0 | IPR000742 |
| SMART | SM00220 | serkin_6 | 605 | 879 | 1.3E-33 | IPR000719 |
| SMART | SM00179 | egfca_6 | 481 | 521 | 7.2E-5 | IPR001881 |
| SMART | SM00181 | egf_5 | 484 | 521 | 12.0 | IPR000742 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 605 | 879 | 37.078442 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 611 | 634 | - | IPR017441 |
| ProSitePatterns | PS01187 | Calcium-binding EGF-like domain signature. | 481 | 504 | - | IPR018097 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 727 | 739 | - | IPR008271 |
| Coils | Coil | Coil | 869 | 889 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G21230.1 | wall associated kinase 5. encodes a wall-associated kinase | 1.04E-124 |
| RefSeq | XP_039847583.1 | wall-associated receptor kinase 2-like isoform X1 [Panicum virgatum] | 0 |
| Q9LMN7 | Wall-associated receptor kinase 5 OS=Arabidopsis thaliana OX=3702 GN=WAK5 PE=2 SV=1 | 1.0E-123 | |
| TrEMBL | A0A0P0V2G9 | Os01g0364400 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0364400 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 6 | AH01.3275, BH01.3663, CH01.3846, CH01.3847, CH02.1873 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0531690.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_059598, gene-QYE76_060264 |
| Poaceae | Oryza coarctata | 3 | Oco01G010200, Oco05G028540, Oco06G029580 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g62430.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G320700 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0105226, Pt_Chr0106279 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G818100 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG052310, gene_TRIDC5BG078330 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G347600.1, TraesCS5B02G526000.1 ... |