Basic Information
Locus ID:
CH02.1873
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Epidermal growth factor-like domain.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH02 | 18667530 | 18685144 | - | CH02.1873 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.65 | 175,153.13 Da | 56.20 | 74.97 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00054 | EGF_CA | 712 | 742 | 6.97835E-4 | - |
| Pfam | PF13947 | Wall-associated receptor kinase galacturonan-binding | 558 | 614 | 1.6E-9 | IPR025287 |
| Pfam | PF00069 | Protein kinase domain | 840 | 993 | 1.5E-29 | IPR000719 |
| SUPERFAMILY | SSF57184 | Growth factor receptor domain | 670 | 753 | 6.28E-8 | IPR009030 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 819 | 1056 | 3.14E-53 | IPR011009 |
| Gene3D | G3DSA:2.10.25.10 | Laminin | 658 | 753 | 1.7E-9 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 803 | 913 | 5.7E-30 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 914 | 1002 | 2.3E-21 | - |
| SMART | SM00220 | serkin_6 | 838 | 1059 | 7.6E-13 | IPR000719 |
| SMART | SM00179 | egfca_6 | 712 | 753 | 4.0E-7 | IPR001881 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 838 | 1104 | 27.750002 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 844 | 867 | - | IPR017441 |
| ProSitePatterns | PS01187 | Calcium-binding EGF-like domain signature. | 712 | 736 | - | IPR018097 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 960 | 972 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1075 | 1089 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1274 | 1370 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1063 | 1119 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1457 | 1471 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1197 | 1225 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1090 | 1104 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1293 | 1316 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1237 | 1259 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1442 | 1471 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1600 | 1619 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1542 | 1574 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1384 | 1408 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G21230.1 | wall associated kinase 5. encodes a wall-associated kinase | 1.51E-89 |
| RefSeq | XP_039847583.1 | wall-associated receptor kinase 2-like isoform X1 [Panicum virgatum] | 0 |
| Q9LMN7 | Wall-associated receptor kinase 5 OS=Arabidopsis thaliana OX=3702 GN=WAK5 PE=2 SV=1 | 1.47E-88 | |
| TrEMBL | A0A8T0SM98 | Protein kinase domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_5KG132114 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 6 | AH01.3275, BH01.3663, CH01.3846, CH01.3847, CH02.1873 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0531690.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_059598, gene-QYE76_060264 |
| Poaceae | Oryza coarctata | 3 | Oco01G010200, Oco05G028540, Oco06G029580 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g62430.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G320700 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0105226, Pt_Chr0106279 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G818100 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG052310, gene_TRIDC5BG078330 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G347600.1, TraesCS5B02G526000.1 ... |