Basic Information
Locus ID:
CH02.1823
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
NAD dependent epimerase/dehydratase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH02 | 17979049 | 17980080 | - | CH02.1823 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.83 | 36,411.40 Da | 50.58 | 62.71 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03152 | Ubiquitin fusion degradation protein UFD1 | 20 | 197 | 1.3E-68 | IPR004854 |
| Gene3D | G3DSA:2.40.40.50 | - | 11 | 120 | 1.3E-35 | IPR042299 |
| Gene3D | G3DSA:3.10.330.10 | - | 122 | 195 | 1.5E-30 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 225 | 251 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 261 | 299 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 203 | 343 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 311 | 332 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G21270.1 | ubiquitin fusion degradation 1. | 1.66E-103 |
| RefSeq | XP_004968700.1 | ubiquitin fusion degradation protein 1 homolog [Setaria italica] | 4.88E-124 |
| Q55BK0 | Ubiquitin fusion degradation protein 1 homolog OS=Dictyostelium discoideum OX=44689 GN=ufd1 PE=3 SV=1 | 6.18E-56 | |
| TrEMBL | A0A1E5VMH9 | Ubiquitin fusion degradation protein 1-like protein OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0012705 PE=3 SV=1 | 2.22E-139 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology