Basic Information
Locus ID:
CH02.1794
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
JAB/MPN domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH02 | 17514256 | 17520084 | + | CH02.1794 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.77 | 56,791.77 Da | 53.11 | 79.51 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08066 | MPN_AMSH_like | 334 | 507 | 3.7185E-105 | IPR044098 |
| Pfam | PF08969 | USP8 dimerisation domain | 14 | 102 | 2.2E-9 | IPR015063 |
| Pfam | PF01398 | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 331 | 437 | 2.6E-16 | IPR000555 |
| SUPERFAMILY | SSF102712 | JAB1/MPN domain | 334 | 463 | 3.01E-19 | - |
| Gene3D | G3DSA:3.40.140.10 | Cytidine Deaminase, domain 2 | 319 | 509 | 2.6E-71 | - |
| Gene3D | G3DSA:1.20.58.80 | - | 10 | 131 | 6.0E-28 | - |
| SMART | SM00232 | pad1_6 | 333 | 460 | 8.3E-12 | IPR000555 |
| ProSiteProfiles | PS50249 | MPN domain profile. | 333 | 463 | 25.213335 | IPR037518 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 237 | 259 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48790.1 | associated molecule with the SH3 domain of STAM 1. | 1.72E-132 |
| RefSeq | XP_004968695.1 | AMSH-like ubiquitin thioesterase 3 [Setaria italica] | 0 |
| Q5PNU3 | AMSH-like ubiquitin thioesterase 3 OS=Arabidopsis thaliana OX=3702 GN=AMSH3 PE=1 SV=2 | 4.94E-147 | |
| TrEMBL | K3XGS8 | MPN domain-containing protein OS=Setaria italica OX=4555 GN=101770439 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology