Basic Information
Locus ID:
CH02.1761
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Dirigent proteins impart stereoselectivity on the phenoxy radical-coupling reaction, yielding optically active lignans from two molecules of coniferyl alcohol in the biosynthesis of lignans, flavonolignans, and alkaloids and thus plays a central role in plant secondary metabolism
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH02 | 17070718 | 17084645 | + | CH02.1761 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.09 | 57,170.38 Da | 42.54 | 89.23 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03018 | Dirigent-like protein | 22 | 154 | 1.3E-26 | IPR004265 |
| Pfam | PF00069 | Protein kinase domain | 190 | 420 | 5.9E-44 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 170 | 452 | 1.35E-62 | IPR011009 |
| Gene3D | G3DSA:2.40.480.10 | - | 27 | 152 | 2.8E-7 | IPR044859 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 175 | 257 | 2.7E-20 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 258 | 471 | 5.0E-47 | - |
| SMART | SM00220 | serkin_6 | 187 | 436 | 1.4E-28 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 187 | 436 | 36.004257 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 193 | 225 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 301 | 313 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45910.1 | U-box domain-containing protein kinase family protein. | 9.6E-55 |
| RefSeq | XP_052137408.1 | U-box domain-containing protein 70-like [Oryza glaberrima] | 2.37E-135 |
| Q5WA76 | U-box domain-containing protein 70 OS=Oryza sativa subsp. japonica OX=39947 GN=PUB70 PE=1 SV=1 | 6.39E-56 | |
| TrEMBL | A0A5J9W505 | Dirigent protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_09476 PE=3 SV=1 | 1.18E-152 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 1 | CH02.1761 |
| Poaceae | Oryza sativa | 4 | LOC_Os11g40370.2, LOC_Os11g40380.1, LOC_Os11g40400.1 ... |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_08G142600 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr04G032630 |