Basic Information
Locus ID:
CH02.1758
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Glycosyl hydrolases family 28
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH02 | 16996623 | 16999078 | + | CH02.1758 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.27 | 76,199.54 Da | 66.47 | 66.59 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00295 | Glycosyl hydrolases family 28 | 367 | 690 | 3.5E-82 | IPR000743 |
| SUPERFAMILY | SSF51126 | Pectin lyase-like | 330 | 732 | 4.04E-112 | IPR011050 |
| Gene3D | G3DSA:2.160.20.10 | - | 321 | 735 | 5.2E-107 | IPR012334 |
| SMART | SM00710 | pbh1 | 549 | 569 | 1100.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 608 | 629 | 600.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 499 | 525 | 1400.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 526 | 547 | 29.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 579 | 600 | 9.8 | IPR006626 |
| ProSitePatterns | PS00502 | Polygalacturonase active site. | 556 | 569 | - | IPR000743 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 129 | 195 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 258 | 323 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 33 | 47 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 62 | 83 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 204 | 245 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 101 | 128 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 33 | 330 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48100.1 | Pectin lyase-like superfamily protein. | 1.8E-165 |
| RefSeq | XP_025818759.1 | polygalacturonase At1g48100-like isoform X1 [Panicum hallii] | 3.75E-253 |
| Q949Z1 | Polygalacturonase At1g48100 OS=Arabidopsis thaliana OX=3702 GN=At1g48100 PE=2 SV=1 | 1.73E-164 | |
| TrEMBL | A0A2T7DMX4 | Polygalacturonase OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_5G383300 PE=3 SV=1 | 1.41E-250 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology