Basic Information
Locus ID:
CH02.175
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH02 | 1483696 | 1490628 | - | CH02.175 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.33 | 134,401.19 Da | 75.92 | 62.47 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 423 | 465 | 6.19168E-14 | - |
| Pfam | PF13639 | Ring finger domain | 422 | 465 | 1.3E-10 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 422 | 471 | 1.06E-16 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 418 | 470 | 2.8E-16 | IPR013083 |
| SMART | SM00184 | ring_2 | 423 | 464 | 2.9E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 423 | 465 | 11.250026 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 542 | 562 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 33 | 103 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 265 | 285 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 717 | 734 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 480 | 506 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 690 | 734 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 764 | 781 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 48 | 62 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 575 | 609 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 791 | 965 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 595 | 609 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 791 | 921 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 762 | 781 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G53820.1 | RING/U-box superfamily protein. | 8.81E-14 |
| RefSeq | XP_039838734.1 | RING-H2 finger protein ATL8-like [Panicum virgatum] | 2.22E-61 |
| P0C035 | RING-H2 finger protein ATL60 OS=Arabidopsis thaliana OX=3702 GN=ATL60 PE=2 SV=1 | 8.66E-13 | |
| TrEMBL | A0A8T0V3U4 | RING-type domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_3KG229050 PE=4 SV=1 | 5.02E-60 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology