Basic Information
Locus ID:
CH02.1704
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
A Receptor for Ubiquitination Targets
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH02 | 16283469 | 16288117 | - | CH02.1704 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.38 | 49,106.76 Da | 57.39 | 85.81 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 98 | 144 | 3.4E-11 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 91 | 147 | 1.83E-17 | IPR036047 |
| SUPERFAMILY | SSF101898 | NHL repeat | 188 | 318 | 4.71E-5 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 96 | 142 | 4.9E-11 | - |
| SMART | SM00256 | fbox_2 | 103 | 143 | 3.6E-8 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 215 | 406 | 5.2E-14 | IPR017451 |
| ProSiteProfiles | PS51318 | Twin arginine translocation (Tat) signal profile. | 1 | 71 | 7.675079 | IPR006311 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 97 | 143 | 11.458055 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G07610.1 | F-box family protein. | 2.81E-17 |
| RefSeq | XP_004979015.1 | F-box protein At5g07610 [Setaria italica] | 1.14E-114 |
| Q9FLS0 | F-box protein At5g07610 OS=Arabidopsis thaliana OX=3702 GN=At5g07610 PE=2 SV=1 | 2.78E-16 | |
| TrEMBL | A0A1E5VFC8 | F-box protein OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0015208 PE=4 SV=1 | 8.87E-186 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 12 | jg10115, jg13810, jg14130, jg17275, jg17276, jg17277, jg2439 ... |
| Aizoaceae | Mesembryanthemum crystallinum | 5 | gene_14413, gene_14414, gene_14893, gene_1984, gene_9907 |
| Amaranthaceae | Atriplex hortensis | 7 | Ah004028, Ah004029, Ah004033, Ah004034, Ah030906, Ah033291 ... |
| Amaranthaceae | Beta vulgaris | 3 | BVRB_2g030420, BVRB_5g104470, BVRB_5g104480 |
| Amaranthaceae | Salicornia bigelovii | 7 | Sbi_jg16415, Sbi_jg24176, Sbi_jg24177, Sbi_jg27434 ... |
| Amaranthaceae | Salicornia europaea | 3 | Seu_jg12024, Seu_jg22737, Seu_jg7899 |
| Amaranthaceae | Suaeda aralocaspica | 4 | GOSA_00008079, GOSA_00010768, GOSA_00010769, GOSA_00016280 |
| Amaranthaceae | Suaeda glauca | 12 | Sgl25015, Sgl25019, Sgl30158, Sgl30162, Sgl52391, Sgl57680 ... |
| Amaranthaceae | Chenopodium album | 13 | gene:ENSEOMG00000005584, gene:ENSEOMG00000007608 ... |
| Amaranthaceae | Chenopodium quinoa | 15 | CQ.Regalona.r1.1BG0021120, CQ.Regalona.r1.2AG0023060 ... |
| Anacardiaceae | Pistacia vera | 8 | pistato.v30187460, pistato.v30187480, pistato.v30187490 ... |
| Apiaceae | Apium graveolens | 26 | Ag10G00383, Ag11G03062, Ag2G02603, Ag2G02604, Ag2G02605 ... |
| Arecaceae | Cocos nucifera | 3 | COCNU_08G004160, COCNU_08G004170, contig69541135G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103711934 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_10.1771.V1.1 |
| Asteraceae | Flaveria trinervia | 7 | Ftri18G18467, Ftri18G22214, Ftri18G29897, Ftri3G18437 ... |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G07610.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10015553m.g.v1.0 |
| Brassicaceae | Brassica nigra | 2 | BniB08g003310.2N, BniB08g003330.2N |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G1108 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-11405, nbisL1-mrna-11453 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.783 |
| Plantaginaceae | Plantago ovata | 41 | Pov_00000383, Pov_00002431, Pov_00002432, Pov_00002516 ... |
| Plumbaginaceae | Limonium bicolor | 2 | Lb4G21819, Lb5G27822 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.1487, CH02.1704, CH02.1706 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_1AG0014950, gene-QOZ80_1AG0014960 ... |
| Poaceae | Oryza coarctata | 3 | Oco03G015950, Oco04G016580, Oco04G016590 |
| Poaceae | Oryza sativa | 2 | LOC_Os02g41910.1, LOC_Os02g41930.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_K252200 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr02G022150, Chr02G022170, Chr03G007470, Chr05G013010 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-6525 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g10238 |
| Portulacaceae | Portulaca oleracea | 5 | evm.TU.LG10.942, evm.TU.LG15.937, evm.TU.LG16.1338 ... |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_7_RagTag.1687 |
| Rhizophoraceae | Carallia pectinifolia | 6 | nbisL1-mrna-12434, nbisL1-mrna-12545, nbisL1-mrna-18536 ... |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-18621, nbisL1-mrna-6387 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-13611 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000002l.50 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00012024 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-17668, nbisL1-mrna-22082 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-12375 |
| Salicaceae | Populus euphratica | 13 | populus_peu03087, populus_peu04414, populus_peu05785 ... |
| Solanaceae | Lycium barbarum | 13 | gene-LOC132603319, gene-LOC132603322, gene-LOC132609885 ... |
| Solanaceae | Solanum chilense | 3 | SOLCI002946500, SOLCI003651200, SOLCI004256900 |
| Solanaceae | Solanum pennellii | 6 | gene-LOC107012822, gene-LOC107017347, gene-LOC107019311 ... |
| Tamaricaceae | Reaumuria soongarica | 3 | STRG.12658_chr02_+, STRG.16278_chr06_+, STRG.964_chr01_- |
| Tamaricaceae | Tamarix chinensis | 4 | TC01G1522, TC02G3321, TC09G0346, TC10G0811 |