HalophFGD

  • Home
  • Species
  • Search
  • Tools
    • Blast
    • GO enrichment
    • KEGG enrichment
    • Genome browser
    • Sequence extract
    • Network
    • Motif Enrichment
    • Motif Scan
    • Primer Design
  • Download
  • Manual
  • Contact
Basic Information
Locus ID: CH02.1619
Species & Taxonomic ID: Echinochloa crus-galli & 90397
Genome Assembly: GWHBDNR00000000
Description:
Maps and Mapping Data
Chromosome Start End Strand ID
CH02 15178321 15181390 + CH02.1619
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
9.15 58,737.81 Da 45.89 78.65 -0.28
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
Pfam PF01158 Ribosomal protein L36e 82 176 1.8E-32 IPR000509
SUPERFAMILY SSF81383 F-box domain 183 230 4.97E-7 IPR036047
Gene3D G3DSA:1.10.10.1760 60S ribosomal protein L36 74 181 5.0E-34 IPR038097
Gene Ontology
Biological Process:
GO:0006412 (translation)
Molecular Function:
GO:0003735 (structural constituent of ribosome) GO:0005515 (protein binding)
Cellular Component:
GO:0005840 (ribosome)
Best hit
Source Best Hit ID Description E-value
TAIR AT5G02450.1 Ribosomal protein L36e family protein. 3.01E-34
RefSeq XP_025813318.1 uncharacterized protein LOC112890685 [Panicum hallii] 3.08E-85
Swiss-Prot Q9LZ57 Large ribosomal subunit protein eL36x OS=Arabidopsis thaliana OX=3702 GN=RPL36C PE=3 SV=1 2.9E-33
TrEMBL A0A835FEX9 60S ribosomal protein L36 OS=Digitaria exilis OX=1010633 GN=HU200_012780 PE=3 SV=1 1.17E-272
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network
🔍 Protein-Protein Interaction Network
Orthology
Family Species Count Orthologous Genes
Amaranthaceae Chenopodium quinoa 1 CQ.Regalona.r1.2BG0003750
Arecaceae Phoenix dactylifera 1 gene-LOC103723243
Asparagaceae Asparagus officinalis 3 AsparagusV1_08.121.V1.1, AsparagusV1_08.122.V1.1 ...
AsparagusV1_08.40.V1.1
Poaceae Echinochloa crus-galli 25 AH01.2804, AH03.1765, AH04.81, AH05.36, AH06.2219, AH06.81 ...
AH06.82, AH06.86, AH06.91, BH01.3139, BH04.87, BH05.38, BH06.152, BH06.88, BH06.92, BH06.93, BH06.96, CH02.1611, CH02.1619, CH04.132, CH05.65, CH06.77, CH06.81, CH06.86, CH08.603
Poaceae Eleusine coracana subsp. coracana 5 gene-QOZ80_6AG0506380, gene-QOZ80_6AG0506930 ...
gene-QOZ80_6BG0458480, gene-QOZ80_6BG0458500, gene-QOZ80_6BG0459000
Poaceae Hordeum vulgare 21 HORVU.MOREX.r3.1HG0042080.1.CDS1 ...
HORVU.MOREX.r3.3HG0218540.1.CDS1, HORVU.MOREX.r3.4HG0415680.1.CDS1, HORVU.MOREX.r3.5HG0531860.1, HORVU.MOREX.r3.6HG0593850.1.CDS1, HORVU.MOREX.r3.6HG0633570.1, HORVU.MOREX.r3.6HG0633580.1.CDS1, HORVU.MOREX.r3.6HG0633650.1.CDS1, HORVU.MOREX.r3.7HG0639160.1.CDS1, HORVU.MOREX.r3.7HG0639300.1, HORVU.MOREX.r3.7HG0639330.1, HORVU.MOREX.r3.7HG0639340.1.CDS1, HORVU.MOREX.r3.7HG0639400.1, HORVU.MOREX.r3.7HG0639630.1.CDS1, HORVU.MOREX.r3.7HG0640210.1.CDS1, HORVU.MOREX.r3.7HG0640300.1, HORVU.MOREX.r3.7HG0648050.1.CDS1, HORVU.MOREX.r3.7HG0703120.1.CDS1, HORVU.MOREX.r3.7HG0728610.1, HORVU.MOREX.r3.7HG0730740.1, HORVU.MOREX.r3.UnG0786460.1.CDS1
Poaceae Lolium multiflorum 6 gene-QYE76_007342, gene-QYE76_007345, gene-QYE76_009179 ...
gene-QYE76_036742, gene-QYE76_043311, gene-QYE76_056319
Poaceae Oryza coarctata 5 Oco11G000690, Oco11G000700, Oco11G000710, Oco11G000720 ...
Oco12G000580
Poaceae Oryza sativa 4 LOC_Os06g02100.1, LOC_Os06g02110.1, LOC_Os06g02330.1 ...
LOC_Os06g02340.1
Poaceae Paspalum vaginatum 6 gene-BS78_10G009200, gene-BS78_10G009300 ...
gene-BS78_10G009400, gene-BS78_10G009600, gene-BS78_10G009900, gene-BS78_10G010800
Poaceae Puccinellia tenuiflora 11 Pt_Chr0300009, Pt_Chr0300011, Pt_Chr0303130, Pt_Chr0303181 ...
Pt_Chr0303708, Pt_Chr0307034, Pt_Chr0404181, Pt_Chr0602145, Pt_Chr0605869, Pt_Chr0700537, Pt_Chr0700592
Poaceae Sporobolus alterniflorus 4 Chr10G000460, Chr10G000470, Chr11G024480, Chr11G024490
Poaceae Thinopyrum elongatum 21 Tel1E01G530500, Tel2E01G282600, Tel3E01G006100 ...
Tel3E01G598100, Tel5E01G820100, Tel6E01G776500, Tel6E01G776600, Tel7E01G068500, Tel7E01G068600, Tel7E01G069400, Tel7E01G069600, Tel7E01G074100, Tel7E01G074400, Tel7E01G076000, Tel7E01G076100, Tel7E01G076200, Tel7E01G076300, Tel7E01G089200, Tel7E01G089600, Tel7E01G710500, Tel7E01G710700
Poaceae Triticum dicoccoides 28 gene_TRIDC1AG048330, gene_TRIDC2AG017290 ...
gene_TRIDC4AG052090, gene_TRIDC4AG052150, gene_TRIDC4AG052210, gene_TRIDC4AG066800, gene_TRIDC4AG066830, gene_TRIDC4AG067040, gene_TRIDC4AG067070, gene_TRIDC4AG067140, gene_TRIDC5BG078370, gene_TRIDC5BG078410, gene_TRIDC5BG078430, gene_TRIDC5BG078450, gene_TRIDC6AG050470, gene_TRIDC6AG061260, gene_TRIDC6BG071280, gene_TRIDC6BG071290, gene_TRIDC7AG003210, gene_TRIDC7AG003230, gene_TRIDC7AG003450, gene_TRIDC7AG003570, gene_TRIDC7AG003640, gene_TRIDC7AG004200, gene_TRIDC7AG059320, gene_TRIDC7AG059340, gene_TRIDC7BG052260, gene_TRIDC7BG054320
Poaceae Triticum aestivum 92 TraesCS1A02G325300.1, TraesCS1D02G326500.1.cds1 ...
TraesCS2B02G164700.1, TraesCS2B02G164900.1, TraesCS2B02G165300.1, TraesCS2D02G143600.1, TraesCS2D02G144000.1, TraesCS2D02G144100.1, TraesCS3A02G375800.1, TraesCS3B02G408000.1.cds1, TraesCS3B02G408100.1, TraesCS3B02G605900.1.cds1, TraesCS3D02G368300.1, TraesCS3D02G491000.1.cds1, TraesCS3D02G491200.1, TraesCS4A02G345600.1.cds1, TraesCS4A02G346200.1, TraesCS4A02G346500.4, TraesCS4A02G346600.1.cds1, TraesCS4A02G424300.1.cds1, TraesCS4A02G446200.1, TraesCS4A02G451300.1.cds1, TraesCS4A02G451500.1.cds1, TraesCS4A02G451800.1.cds1, TraesCS4A02G452000.1, TraesCS4A02G452100.1, TraesCS4A02G452900.1.cds1, TraesCS4A02G453200.1, TraesCS4A02G453300.1, TraesCS4A02G453500.1, TraesCS4A02G454000.1.cds1, TraesCS4A02G454100.1.cds1, TraesCS4A02G454600.1.cds1, TraesCS4A02G455400.1.cds1, TraesCS4A02G455500.1.cds1, TraesCS4A02G455600.1, TraesCS4A02G455700.1.cds1, TraesCS5B02G526700.1, TraesCS5B02G526800.2, TraesCS5B02G526900.2, TraesCS5D02G525900.2, TraesCS5D02G526000.1, TraesCS5D02G526400.1, TraesCS6A02G062900.1.cds1, TraesCS6A02G372900.1, TraesCS6A02G417400.1.cds1, TraesCS6B02G471800.1.cds1, TraesCS6B02G471900.1.cds1, TraesCS6B02G472000.1.cds1, TraesCS6D02G062000.1, TraesCS6D02G357000.1, TraesCS7A02G011800.1, TraesCS7A02G033800.1.cds1, TraesCS7A02G034000.1, TraesCS7A02G034100.1.cds1, TraesCS7A02G035400.1, TraesCS7A02G036600.2, TraesCS7A02G036700.1, TraesCS7A02G037200.1, TraesCS7A02G042000.1, TraesCS7A02G064900.1, TraesCS7A02G202500.1.cds1, TraesCS7A02G202600.1.cds1, TraesCS7A02G425600.1, TraesCS7A02G425800.1, TraesCS7A02G471600.1.cds1, TraesCS7A02G471700.1.cds1, TraesCS7B02G109600.1, TraesCS7B02G326500.1, TraesCS7B02G389200.1.cds1, TraesCS7B02G448700.1.cds1, TraesCS7B02G448800.1.cds1, TraesCS7D02G030300.1.cds1, TraesCS7D02G030500.1, TraesCS7D02G030600.1.cds1, TraesCS7D02G031900.1, TraesCS7D02G032200.2, TraesCS7D02G032900.1, TraesCS7D02G033300.1.cds1, TraesCS7D02G033600.1.cds1, TraesCS7D02G033700.1, TraesCS7D02G033800.1.cds1, TraesCS7D02G033900.1, TraesCS7D02G037500.1.cds1, TraesCS7D02G037600.1.cds1, TraesCS7D02G059500.1, TraesCS7D02G077700.1.cds1, TraesCS7D02G205900.1.cds1, TraesCS7D02G418100.1, TraesCS7D02G430100.1, TraesCSU02G161600.1.cds1, TraesCSU02G164500.1.cds1
Poaceae Zea mays 2 Zm00001eb302270_P001, Zm00001eb378970_P001
Poaceae Zoysia japonica 2 nbis-gene-40240, nbis-gene-40241
Poaceae Zoysia macrostachya 2 Zma_g28991, Zma_g28992
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.