halophFGD

Basic Information

Locus ID: CH02.1604

Species & Taxonomic ID: Echinochloa crus-galli & 90397

Genome Assembly: GWHBDNR00000000

Description: Ubiquitin homologues

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
CH02	15041116	15042027	+	CH02.1604

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
10.21	30,421.84 Da	37.78	98.65	0.41

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00240	Ubiquitin family	84	156	4.3E-17	IPR000626
SUPERFAMILY	SSF54236	Ubiquitin-like	80	159	5.61E-21	IPR029071
Gene3D	G3DSA:3.10.20.90	-	77	163	2.2E-25	-
SMART	SM00213	ubq_7	82	154	1.9E-18	IPR000626
ProSiteProfiles	PS50053	Ubiquitin domain profile.	82	158	22.961369	IPR000626
ProSitePatterns	PS00299	Ubiquitin domain signature.	108	133	-	IPR019954
PRINTS	PR00348	Ubiquitin signature	92	112	5.0E-8	IPR019956
PRINTS	PR00348	Ubiquitin signature	113	133	5.0E-8	IPR019956

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K08770 (ubiquitin C)

Pathway:

ko03320 (PPAR signaling pathway) map03320 (PPAR signaling pathway)

Best hit

Source	Best Hit ID	Description	E-value
TAIR	AT4G05050.4	ubiquitin 11. polyubiquitin gene, belongs to a subtype group with UBQ10 and UBQ14. Various ecotypes of Arabidopsis have different numbers of ubiquitin repeats within this gene.	1.84E-24
RefSeq	XP_039853135.1	uncharacterized protein LOC120711610 [Panicum virgatum]	1.15E-109
Swiss-Prot	P0CG83	Polyubiquitin (Fragment) OS=Hordeum vulgare OX=4513 PE=2 SV=1	2.85E-23
TrEMBL	A0A3L6RJJ8	Ubiquitin-like domain-containing protein OS=Panicum miliaceum OX=4540 GN=C2845_PM13G06360 PE=4 SV=1	2.8E-117

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

Family	Species	Count	Orthologous Genes
Poaceae	Echinochloa crus-galli	2	BH02.1486, CH02.1604