Basic Information
Locus ID:
CH02.1528
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH02 | 14156193 | 14159920 | - | CH02.1528 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.17 | 77,353.88 Da | 43.62 | 93.33 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 299 | 341 | 6.5475E-27 | - |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 503 | 541 | 3.0E-9 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 421 | 459 | 1.3E-8 | IPR000225 |
| Pfam | PF04564 | U-box domain | 295 | 365 | 2.6E-20 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 388 | 666 | 1.23E-49 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 285 | 371 | 5.16E-31 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 508 | 669 | 4.3E-26 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 292 | 368 | 4.4E-32 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 385 | 507 | 9.4E-24 | IPR011989 |
| Gene3D | G3DSA:1.20.930.20 | - | 52 | 165 | 3.8E-9 | IPR036537 |
| SMART | SM00185 | arm_5 | 461 | 501 | 7.9 | IPR000225 |
| SMART | SM00185 | arm_5 | 420 | 460 | 8.2E-5 | IPR000225 |
| SMART | SM00185 | arm_5 | 628 | 668 | 100.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 379 | 418 | 41.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 584 | 624 | 290.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 502 | 542 | 0.0012 | IPR000225 |
| SMART | SM00185 | arm_5 | 543 | 583 | 8.0 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 298 | 361 | 4.2E-33 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 554 | 596 | 8.5224 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 431 | 473 | 12.0924 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 294 | 368 | 45.672115 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 513 | 555 | 9.4324 | IPR000225 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 272 | 293 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 273 | 292 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 51 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 692 | 718 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 692 | 710 | - | - |
| Coils | Coil | Coil | 39 | 59 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G46510.1 | plant U-box 13. Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays. Can be phosphorylated in vitro by MLPK, ARK1, and ARK2 but not by SD1-29. | 3.17E-138 |
| RefSeq | XP_034574241.1 | protein spotted leaf 11-like [Setaria viridis] | 1.48E-309 |
| A2ZLU6 | Protein spotted leaf 11 OS=Oryza sativa subsp. indica OX=39946 GN=SPL11 PE=1 SV=2 | 2.2E-140 | |
| TrEMBL | A0A4U6T967 | RING-type E3 ubiquitin transferase OS=Setaria viridis OX=4556 GN=SEVIR_9G456100v2 PE=4 SV=1 | 2.08E-307 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology