Basic Information
Locus ID:
CH02.1400
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
domain in FBox and BRCT domain containing plant proteins
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH02 | 12812845 | 12814612 | + | CH02.1400 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.84 | 60,505.88 Da | 47.08 | 100.47 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08387 | FBD | 443 | 481 | 1.0E-4 | IPR006566 |
| SUPERFAMILY | SSF81383 | F-box domain | 3 | 42 | 6.8E-6 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 170 | 278 | 4.79E-9 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 143 | 308 | 1.2E-12 | IPR032675 |
| Coils | Coil | Coil | 498 | 518 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_039813716.1 | putative F-box/LRR-repeat protein At4g15060 isoform X1 [Panicum virgatum] | 1.65E-231 |
| TrEMBL | A0A8T0RNA6 | F-box domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_5NG173300 PE=4 SV=1 | 6.98E-230 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_390 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah017899 |
| Amaranthaceae | Suaeda glauca | 6 | Sgl45777, Sgl45778, Sgl45816, Sgl45818, Sgl50520, Sgl50521 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000009555, gene:ENSEOMG00000033591 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0004120, CQ.Regalona.r1.8BG0004410 |
| Arecaceae | Cocos nucifera | 1 | scaffold004783G000060 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103696164 |
| Poaceae | Echinochloa crus-galli | 8 | AH02.859, AH02.861, AH02.959, AH03.1007, BH02.1162 ... |
| Poaceae | Eleusine coracana subsp. coracana | 8 | gene-QOZ80_1AG0004910, gene-QOZ80_1AG0004930 ... |
| Poaceae | Lolium multiflorum | 4 | gene-QYE76_013133, gene-QYE76_052331, gene-QYE76_052332 ... |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_03G107400, gene-BS78_03G116000 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr05G001150, Chr05G004060, Chr05G004070, Chr08G019910 ... |
| Poaceae | Thinopyrum elongatum | 4 | Tel3E01G309500, Tel3E01G309800, Tel4E01G363800 ... |
| Poaceae | Triticum aestivum | 4 | TraesCS3B02G207000.1, TraesCS3D02G182700.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb127920_P001, Zm00001eb152580_P001 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-32453 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g7395 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG01.1658 |