Basic Information
Locus ID:
CH02.130
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Holliday junction DNA helicase ruvB N-terminus
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH02 | 1142815 | 1148690 | + | CH02.130 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.25 | 94,133.39 Da | 48.22 | 91.28 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00009 | AAA | 575 | 708 | 4.32094E-23 | - |
| Pfam | PF17862 | AAA+ lid domain | 731 | 773 | 5.6E-12 | IPR041569 |
| Pfam | PF00004 | ATPase family associated with various cellular activities (AAA) | 577 | 707 | 2.3E-38 | IPR003959 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 537 | 795 | 3.11E-61 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 536 | 708 | 5.0E-97 | IPR027417 |
| Gene3D | G3DSA:1.10.8.60 | - | 709 | 785 | 5.0E-97 | - |
| SMART | SM00382 | AAA_5 | 573 | 710 | 5.0E-21 | IPR003593 |
| ProSitePatterns | PS00674 | AAA-protein family signature. | 680 | 699 | - | IPR003960 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 455 | 521 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 186 | 232 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 193 | 232 | - | - |
| Coils | Coil | Coil | 43 | 63 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G64110.3 | P-loop containing nucleoside triphosphate hydrolases superfamily protein. | 0 |
| RefSeq | XP_039845848.1 | uncharacterized protein LOC120705524 isoform X4 [Panicum virgatum] | 0 |
| Q9P7J5 | Uncharacterized AAA domain-containing protein C24B10.10c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPCC24B10.10c PE=3 SV=1 | 5.36E-67 | |
| TrEMBL | A0A2T7DT73 | AAA domain-containing protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_5G534700 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology