Basic Information
Locus ID:
CH02.1205
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
F-box-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH02 | 10929680 | 10930867 | + | CH02.1205 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.90 | 40,373.85 Da | 43.61 | 88.93 | 0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 4 | 44 | 1.0E-9 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 4 | 55 | 4.06E-12 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 4 | 46 | 1.1E-9 | - |
| SMART | SM00256 | fbox_2 | 5 | 47 | 5.6E-8 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 1 | 47 | 8.517177 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_022685460.1 | uncharacterized protein LOC101771470, partial [Setaria italica] | 3.31E-44 |
| TrEMBL | A0A5J9V743 | F-box domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_23026 PE=4 SV=1 | 2.82E-54 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH02.1028, AH02.1030, CH02.1205 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_1BG0054310 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr05G003920 |