Basic Information
Locus ID:
CH02.1162
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH02 | 10613412 | 10621217 | + | CH02.1162 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.79 | 124,966.42 Da | 40.34 | 79.52 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 440 | 476 | 3.4E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 479 | 518 | 0.27 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 913 | 944 | 0.035 | IPR001680 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 505 | 1095 | 3.06E-37 | IPR011047 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 336 | 653 | 3.05E-41 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 750 | 961 | 5.9E-22 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 287 | 553 | 1.3E-31 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 554 | 668 | 7.1E-8 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 962 | 1099 | 2.2E-6 | IPR015943 |
| SMART | SM00320 | WD40_4 | 390 | 429 | 96.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 522 | 565 | 170.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1001 | 1037 | 9.0 | IPR001680 |
| SMART | SM00667 | Lish | 4 | 36 | 3.1E-5 | IPR006594 |
| SMART | SM00320 | WD40_4 | 1060 | 1092 | 44.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 906 | 945 | 5.5E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 863 | 903 | 2.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 435 | 476 | 4.4E-6 | IPR001680 |
| SMART | SM00668 | ctlh | 34 | 92 | 5.7E-15 | IPR006595 |
| SMART | SM00320 | WD40_4 | 568 | 611 | 1.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 478 | 519 | 0.001 | IPR001680 |
| SMART | SM00320 | WD40_4 | 818 | 860 | 69.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 329 | 368 | 0.08 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 442 | 477 | 8.544697 | - |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 13.873182 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 913 | 944 | 11.711506 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 589 | 620 | 9.205141 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 913 | 944 | 9.783781 | - |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 10.297499 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 442 | 477 | 10.14085 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 463 | 477 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1094 | 1131 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1112 | 1131 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G16830.1 | TOPLESS-related 2. | 0 |
| RefSeq | XP_034596563.1 | protein TPR1 isoform X1 [Setaria viridis] | 0 |
| Q5NBT9 | Protein TPR1 OS=Oryza sativa subsp. japonica OX=39947 GN=TPR1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A4U6UCB6 | WD_REPEATS_REGION domain-containing protein OS=Setaria viridis OX=4556 GN=SEVIR_5G058100v2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology