Basic Information
Locus ID:
CH02.1075
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
F-box domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH02 | 9646971 | 9649224 | - | CH02.1075 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.57 | 64,769.49 Da | 58.98 | 81.22 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 36 | 71 | 3.4E-6 | IPR001810 |
| Pfam | PF08268 | F-box associated domain | 240 | 329 | 9.0E-6 | IPR013187 |
| SUPERFAMILY | SSF81383 | F-box domain | 25 | 98 | 1.96E-13 | IPR036047 |
| SUPERFAMILY | SSF50965 | Galactose oxidase, central domain | 127 | 385 | 1.7E-7 | IPR011043 |
| Gene3D | G3DSA:1.20.1280.50 | - | 36 | 73 | 1.8E-6 | - |
| SMART | SM00256 | fbox_2 | 37 | 77 | 3.1E-5 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 138 | 331 | 1.1E-31 | IPR017451 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 434 | 474 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G52320.1 | F-box and associated interaction domains-containing protein. | 5.16E-20 |
| RefSeq | XP_044322733.1 | putative F-box protein At4g09190 [Triticum aestivum] | 1.64E-153 |
| Q9FT50 | Putative F-box protein At3g52320 OS=Arabidopsis thaliana OX=3702 GN=At3g52320 PE=4 SV=1 | 5.08E-19 | |
| TrEMBL | M8CUI8 | Uncharacterized protein OS=Aegilops tauschii OX=37682 PE=4 SV=1 | 8.11E-131 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology