Basic Information
Locus ID:
CH01.988
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Calmodulin
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH01 | 7471601 | 7478128 | + | CH01.988 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.22 | 142,218.19 Da | 67.59 | 70.07 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 323 | 359 | 1.5165E-10 | IPR002048 |
| CDD | cd00051 | EFh | 250 | 312 | 2.49596E-23 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 250 | 311 | 1.4E-13 | IPR002048 |
| Pfam | PF00036 | EF hand | 323 | 350 | 7.3E-8 | IPR002048 |
| SUPERFAMILY | SSF57756 | Retrovirus zinc finger-like domains | 631 | 668 | 1.94E-7 | IPR036875 |
| SUPERFAMILY | SSF47473 | EF-hand | 239 | 360 | 8.66E-39 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 225 | 313 | 2.8E-28 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 314 | 361 | 3.5E-16 | - |
| Gene3D | G3DSA:4.10.60.10 | - | 598 | 674 | 2.5E-8 | - |
| SMART | SM00343 | c2hcfinal6 | 632 | 648 | 0.016 | IPR001878 |
| SMART | SM00343 | c2hcfinal6 | 651 | 667 | 0.023 | IPR001878 |
| SMART | SM00054 | efh_1 | 323 | 351 | 3.7E-8 | IPR002048 |
| SMART | SM00054 | efh_1 | 250 | 278 | 1.8E-7 | IPR002048 |
| SMART | SM00054 | efh_1 | 286 | 314 | 5.8E-7 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 319 | 354 | 17.386631 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 246 | 281 | 16.103443 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 282 | 317 | 13.760229 | IPR002048 |
| ProSiteProfiles | PS50158 | Zinc finger CCHC-type profile. | 651 | 667 | 9.042855 | IPR001878 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 295 | 307 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 259 | 271 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 332 | 344 | - | IPR018247 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 581 | 623 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 970 | 1008 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 689 | 706 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 220 | 234 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 736 | 750 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 505 | 549 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 210 | 234 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 421 | 441 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1198 | 1212 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 657 | 753 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1194 | 1219 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 598 | 619 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 116 | 187 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 707 | 723 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 163 | 182 | - | - |
Gene Ontology
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G66410.1 | calmodulin 4. encodes a calmodulin | 1.03E-36 |
| RefSeq | XP_034572726.1 | neo-calmodulin-like [Setaria viridis] | 2.91E-52 |
| P04464 | Calmodulin OS=Triticum aestivum OX=4565 PE=1 SV=3 | 2.02E-45 | |
| TrEMBL | A0A8T0R7W0 | CCHC-type domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_6KG225820 PE=4 SV=1 | 3.93E-112 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||