halophFGD

Basic Information

Locus ID: CH01.959

Species & Taxonomic ID: Echinochloa crus-galli & 90397

Genome Assembly: GWHBDNR00000000

Description: Ribosome inactivating protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
CH01	7210906	7221680	-	CH01.959

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.38	162,544.13 Da	50.32	83.46	-0.43

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00223	TOPRIM_TopoIIB_SPO	1098	1261	3.39085E-44	IPR034136
Pfam	PF00161	Ribosome inactivating protein	141	344	2.3E-35	IPR001574
Pfam	PF04406	Type IIB DNA topoisomerase	991	1043	4.1E-9	IPR013049
Pfam	PF07714	Protein tyrosine and serine/threonine kinase	1282	1443	1.3E-13	IPR001245
SUPERFAMILY	SSF56371	Ribosome inactivating proteins (RIP)	136	374	6.94E-36	IPR036041
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	1280	1448	8.05E-28	IPR011009
SUPERFAMILY	SSF56726	DNA topoisomerase IV, alpha subunit	991	1273	1.7E-58	IPR036078
Gene3D	G3DSA:3.40.1360.10	-	1053	1275	1.7E-47	-
Gene3D	G3DSA:3.40.420.10	Ricin (A subunit), domain 1	124	309	4.0E-33	IPR016138
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	1276	1453	5.1E-32	-
Gene3D	G3DSA:1.10.10.10	-	918	1050	1.3E-13	IPR036388
ProSiteProfiles	PS50011	Protein kinase domain profile.	1160	1447	13.997621	IPR000719
PRINTS	PR01550	DNA topoisomerase VI subunit A family signature	1012	1023	2.0E-20	IPR002815
PRINTS	PR01550	DNA topoisomerase VI subunit A family signature	1044	1059	2.0E-20	IPR002815
PRINTS	PR01550	DNA topoisomerase VI subunit A family signature	1154	1170	2.0E-20	IPR002815
PRINTS	PR01550	DNA topoisomerase VI subunit A family signature	1026	1043	2.0E-20	IPR002815
PRINTS	PR01550	DNA topoisomerase VI subunit A family signature	1122	1143	2.0E-20	IPR002815
PRINTS	PR01550	DNA topoisomerase VI subunit A family signature	1098	1115	2.0E-20	IPR002815
MobiDBLite	mobidb-lite	consensus disorder prediction	475	498	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	544	595	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	479	497	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	570	585	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	48	88	-	-
Coils	Coil	Coil	828	855	-	-
Coils	Coil	Coil	1456	1456	-	-
Coils	Coil	Coil	538	558	-	-
Coils	Coil	Coil	767	805	-	-
Coils	Coil	Coil	739	759	-	-

Gene Ontology

Biological Process:

GO:0006259 (DNA metabolic process) GO:0006468 (protein phosphorylation) GO:0017148 (negative regulation of translation) GO:0042138 (meiotic DNA double-strand break formation)

Molecular Function:

GO:0003677 (DNA binding) GO:0003824 (catalytic activity) GO:0003918 (DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity) GO:0004672 (protein kinase activity) GO:0005524 (ATP binding) GO:0030598 (rRNA N-glycosylase activity)

Cellular Component:

GO:0005694 (chromosome)

Best hit

Source	Best Hit ID	Description	E-value
TAIR	AT3G59350.2	Protein kinase superfamily protein.	3.28E-29
RefSeq	XP_025798193.1	uncharacterized protein LOC112878024 [Panicum hallii]	1.67E-60
Swiss-Prot	Q2QM00	Meiotic recombination protein SPO11-4 OS=Oryza sativa subsp. japonica OX=39947 GN=SPO11-4 PE=1 SV=2	4.51E-56
TrEMBL	A0A5J9T2M9	TP6A_N domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_48710 PE=3 SV=1	8.64E-88

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Poaceae	Echinochloa crus-galli	2	AH01.781, CH01.959
Poaceae	Lolium multiflorum	1	gene-QYE76_014456
Poaceae	Thinopyrum elongatum	1	Tel1E01G452200
Poaceae	Triticum dicoccoides	1	gene_TRIDC1AG041330
Poaceae	Triticum aestivum	2	TraesCS1A02G277900.1.cds1, TraesCS1B02G286800.1.cds1