Basic Information
Locus ID:
CH01.903
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH01 | 6659871 | 6661142 | - | CH01.903 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.46 | 46,346.54 Da | 60.07 | 92.93 | 0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 52 | 85 | 5.3E-11 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 40 | 85 | 1.7E-12 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 52 | 87 | 2.5E-11 | - |
| SMART | SM00256 | fbox_2 | 53 | 92 | 2.0E-5 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 47 | 85 | 9.523964 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 47 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 13 | 39 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_034570270.1 | uncharacterized protein LOC117835030 [Setaria viridis] | 1.0E-241 |
| TrEMBL | A0A4V6D0N5 | F-box domain-containing protein OS=Setaria viridis OX=4556 GN=SEVIR_9G106900v2 PE=4 SV=1 | 1.94E-249 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Arecaceae | Cocos nucifera | 1 | COCNU_08G000350 |
| Poaceae | Echinochloa crus-galli | 2 | AH01.744, CH01.903 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_3BG0263140 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0339180.1.CDS1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_005203, gene-QYE76_027619, gene-QYE76_062197 |
| Poaceae | Oryza coarctata | 2 | Oco05G022400, Oco06G023290 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g51760.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G095900 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0203958 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr01G006380, Chr05G003980, Chr05G008140, Chr06G010230 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel4E01G098800, Tel5E01G124400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG040110, gene_TRIDC4BG009030 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G256400.1.cds1, TraesCS4B02G058300.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb055960_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-14934, nbis-gene-16019 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g2891, Zma_g573 |