Basic Information
Locus ID:
CH01.803
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
HORMA domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH01 | 5840652 | 5845475 | + | CH01.803 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.75 | 91,372.76 Da | 50.79 | 90.78 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02301 | HORMA domain | 294 | 471 | 2.9E-32 | IPR003511 |
| SUPERFAMILY | SSF56019 | The spindle assembly checkpoint protein mad2 | 292 | 483 | 8.76E-19 | IPR036570 |
| SUPERFAMILY | SSF81383 | F-box domain | 6 | 49 | 1.03E-6 | IPR036047 |
| Gene3D | G3DSA:3.30.900.10 | HORMA domain | 288 | 536 | 1.8E-40 | IPR036570 |
| ProSiteProfiles | PS50815 | HORMA domain profile. | 289 | 502 | 25.580723 | IPR003511 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 783 | 809 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G67370.1 | DNA-binding HORMA family protein. meiotic asynaptic mutant 1 (ASY1). ASY1 protein is initially distributed as numerous foci throughout the chromatin. During early G2, the foci are juxtaposed to the nascent chromosome axes to form a continuous axis associated signal. | 3.34E-37 |
| RefSeq | XP_015621504.1 | uncharacterized protein LOC4327138 [Oryza sativa Japonica Group] | 4.86E-136 |
| Q76CY8 | Meiosis-specific protein PAIR2 OS=Oryza sativa subsp. japonica OX=39947 GN=PAIR2 PE=2 SV=1 | 6.28E-47 | |
| TrEMBL | B8ADF4 | HORMA domain-containing protein OS=Oryza sativa subsp. indica OX=39946 GN=OsI_00538 PE=4 SV=1 | 4.34E-262 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg34514, jg34515, jg9593, jg9594 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_18017, gene_18167 |
| Amaranthaceae | Atriplex hortensis | 4 | Ah000780, Ah001193, Ah017137, Ah024861 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g150910 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg12012, Sbi_jg24049, Sbi_jg24050, Sbi_jg46940 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg12147, Seu_jg21231 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00002639, GOSA_00009569 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl35014, Sgl40407, Sgl80421, Sgl82882 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000005862, gene:ENSEOMG00000025131 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30228600 |
| Apiaceae | Apium graveolens | 1 | Ag8G02309 |
| Arecaceae | Cocos nucifera | 1 | COCNU_02G009020 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103716145 |
| Asparagaceae | Asparagus officinalis | 8 | AsparagusV1_02.1386.V1.1, AsparagusV1_04.1459.V1.1 ... |
| Asteraceae | Flaveria trinervia | 1 | Ftri9G03769 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G67370.1, AT4G32200.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10018311m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g22320.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB03g044610.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G1026 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G1072 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno04g03200 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0219s00008.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 3 | gene.Thate01g24690, gene.Thate01g25600, gene.Thate08g06150 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.765 |
| Plantaginaceae | Plantago ovata | 8 | Pov_00002076, Pov_00011472, Pov_00012073, Pov_00013527 ... |
| Plumbaginaceae | Limonium bicolor | 1 | Lb7G34320 |
| Poaceae | Echinochloa crus-galli | 10 | AH03.2515, AH05.1522, BH02.1837, BH03.2206, BH03.2658 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_1BG0083320, gene-QOZ80_3AG0217020 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0494140.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_023176 |
| Poaceae | Oryza coarctata | 2 | Oco14G006360, Oco18G008960 |
| Poaceae | Oryza sativa | 4 | LOC_Os01g07170.1, LOC_Os03g10570.1, LOC_Os09g20800.1 ... |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G234400 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0701440, Pt_Chr0701491, Pt_Chr0702733 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr0G001020, Chr10G015140, Chr11G007140, Chr14G016700 |
| Poaceae | Thinopyrum elongatum | 3 | Tel3E01G306700, Tel5E01G457700, Tel5E01G751600 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC5BG046830 |
| Poaceae | Triticum aestivum | 4 | TraesCS5A02G286500.1, TraesCS5A02G304300.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb102420_P005, Zm00001eb247260_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-10362 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.1325, evm.TU.LG12.376 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g03370 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_17_RagTag.120, evm.TU.Scaffold_8_RagTag.1603 |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-23234, nbisL1-mrna-27054, nbisL1-mrna-27240 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-11364, nbisL1-mrna-9335 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-14635 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000001l.481, evm.TU.utg000013l.72 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00006420 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-4981, nbisL1-mrna-6979 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-13901 |
| Salicaceae | Populus euphratica | 2 | populus_peu04007, populus_peu34847 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132641278 |
| Solanaceae | Solanum chilense | 1 | SOLCI006592900 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107017837 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_3358 |
| Tamaricaceae | Tamarix chinensis | 1 | TC11G0420 |
| Zosteraceae | Zostera marina | 1 | Zosma03g36440.v3.1 |