Basic Information
Locus ID:
CH01.787
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Short Name:
IAA16
Description:
Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH01 | 5708827 | 5710642 | + | CH01.787 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.67 | 20,600.45 Da | 52.91 | 55.05 | -0.81 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02309 | AUX/IAA family | 23 | 177 | 2.7E-73 | IPR033389 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 69 | 167 | 5.4E-22 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 71 | 180 | 1.0E-42 | - |
| ProSiteProfiles | PS51745 | PB1 domain profile. | 76 | 168 | 25.510302 | IPR000270 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 76 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G04730.1 | indoleacetic acid-induced protein 16. early auxin-induced (IAA16) | 4.39E-63 |
| RefSeq | XP_039828626.1 | auxin-responsive protein IAA13-like [Panicum virgatum] | 4.96E-106 |
| A2XLV9 | Auxin-responsive protein IAA13 OS=Oryza sativa subsp. indica OX=39946 GN=IAA13 PE=2 SV=1 | 2.04E-77 | |
| TrEMBL | A0A8T0MJC9 | Auxin-responsive protein OS=Panicum virgatum OX=38727 GN=PVAP13_9NG106800 PE=3 SV=1 | 2.36E-105 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology