Basic Information
Locus ID:
CH01.785
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Short Name:
IAA16
Description:
Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH01 | 5698548 | 5700495 | + | CH01.785 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.01 | 24,827.15 Da | 44.86 | 65.54 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02309 | AUX/IAA family | 25 | 222 | 1.2E-76 | IPR033389 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 114 | 212 | 9.42E-22 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 116 | 225 | 1.7E-42 | - |
| ProSiteProfiles | PS51745 | PB1 domain profile. | 121 | 213 | 25.510302 | IPR000270 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 46 | 121 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 53 | 67 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G04730.1 | indoleacetic acid-induced protein 16. early auxin-induced (IAA16) | 4.68E-72 |
| RefSeq | XP_039828626.1 | auxin-responsive protein IAA13-like [Panicum virgatum] | 9.92E-150 |
| A2XLV9 | Auxin-responsive protein IAA13 OS=Oryza sativa subsp. indica OX=39946 GN=IAA13 PE=2 SV=1 | 3.11E-105 | |
| TrEMBL | A0A3L6TJJ8 | Auxin-responsive protein OS=Panicum miliaceum OX=4540 GN=C2845_PM01G28560 PE=3 SV=1 | 2.24E-148 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology