Basic Information
Locus ID:
CH01.743
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
TPL-binding domain in jasmonate signalling
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH01 | 5405916 | 5412863 | - | CH01.743 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.69 | 151,901.17 Da | 54.68 | 70.24 | -0.68 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04301 | NAT_SF | 1209 | 1270 | 3.75463E-5 | - |
| CDD | cd15539 | PHD1_AIRE | 1015 | 1054 | 1.00982E-15 | - |
| Pfam | PF16135 | Tify domain binding domain | 936 | 986 | 1.6E-12 | IPR032308 |
| SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 1202 | 1290 | 1.61E-7 | IPR016181 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 998 | 1055 | 1.33E-13 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1004 | 1106 | 6.8E-16 | IPR013083 |
| Gene3D | G3DSA:3.40.630.30 | - | 1186 | 1303 | 1.1E-5 | - |
| SMART | SM00249 | PHD_3 | 1056 | 1110 | 14.0 | IPR001965 |
| SMART | SM00249 | PHD_3 | 1014 | 1055 | 1.8E-11 | IPR001965 |
| ProSiteProfiles | PS51186 | Gcn5-related N-acetyltransferase (GNAT) domain profile. | 1149 | 1307 | 11.504114 | IPR000182 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 1012 | 1057 | 10.050699 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 1015 | 1054 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 400 | 448 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1366 | 1390 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 482 | 505 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 642 | 657 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 372 | 387 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 227 | 245 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 847 | 874 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 41 | 67 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 535 | 733 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 538 | 568 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 360 | 450 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 712 | 727 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 26 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 790 | 819 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1358 | 1390 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 607 | 630 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 486 | 502 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 218 | 249 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 588 | 606 | - | - |
| Coils | Coil | Coil | 1114 | 1134 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G36740.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein. | 2.03E-163 |
| RefSeq | XP_004981793.1 | uncharacterized protein LOC101774449 isoform X1 [Setaria italica] | 0 |
| F4IXE7 | Increased DNA methylation 1 OS=Arabidopsis thaliana OX=3702 GN=IDM1 PE=1 SV=1 | 1.85E-100 | |
| TrEMBL | A0A2T7C154 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_9G086600 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology