Basic Information
Locus ID:
CH01.645
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH01 | 4673567 | 4680480 | - | CH01.645 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.39 | 60,334.23 Da | 52.87 | 76.27 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04468 | S1_eIF5A | 475 | 545 | 3.75486E-32 | - |
| Pfam | PF01287 | Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold | 474 | 543 | 1.2E-28 | IPR020189 |
| SUPERFAMILY | SSF50104 | Translation proteins SH3-like domain | 404 | 482 | 5.01E-26 | IPR008991 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 13 | 291 | 3.66E-32 | IPR036322 |
| SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | 475 | 545 | 1.77E-24 | IPR012340 |
| Gene3D | G3DSA:2.130.10.10 | - | 9 | 317 | 4.6E-55 | IPR015943 |
| Gene3D | G3DSA:2.30.30.30 | - | 389 | 474 | 9.4E-43 | IPR014722 |
| Gene3D | G3DSA:2.40.50.140 | - | 475 | 548 | 3.1E-33 | - |
| SMART | SM00320 | WD40_4 | 1 | 40 | 11.0 | IPR001680 |
| SMART | SM01376 | eIF_5a_2 | 474 | 543 | 1.5E-34 | IPR020189 |
| SMART | SM00320 | WD40_4 | 214 | 259 | 0.99 | IPR001680 |
| SMART | SM00320 | WD40_4 | 43 | 80 | 48.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 82 | 121 | 0.034 | IPR001680 |
| TIGRFAM | TIGR00037 | eIF_5A: translation elongation factor IF5A | 406 | 542 | 1.3E-40 | IPR001884 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 89 | 121 | 8.861059 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 89 | 121 | 10.541869 | IPR001680 |
| ProSitePatterns | PS00302 | Eukaryotic initiation factor 5A hypusine signature. | 439 | 446 | - | IPR019769 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 390 | 411 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 324 | 373 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G13950.1 | eukaryotic elongation factor 5A-1. Encodes eukaryotic translation initiation factor 5A (EIF-5A).In mammalian cells it functions as a shuttle protein that translocates mRNA from the nucleus to cytoplasmic ribosomes. Overexpression results in an increase in both primary and secondary xylem formation. In RNAi suppressed lines, xylem formation is reduced. | 1.72E-89 |
| RefSeq | XP_025792200.1 | mitotic checkpoint protein BUB3.3 [Panicum hallii] | 5.54E-190 |
| P56335 | Eukaryotic translation initiation factor 5A-3 OS=Solanum tuberosum OX=4113 GN=EIF5A3 PE=2 SV=1 | 3.91E-99 | |
| TrEMBL | B8AK76 | eIF-5a domain-containing protein OS=Oryza sativa subsp. indica OX=39946 GN=OsI_13610 PE=3 SV=1 | 5.24E-230 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology