Basic Information
Locus ID:
CH01.5523
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH01 | 54656808 | 54658311 | + | CH01.5523 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.59 | 49,792.04 Da | 45.17 | 80.86 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 168 | 200 | 3.7E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 334 | 367 | 0.014 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 165 | 460 | 3.3E-39 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 263 | 466 | 3.2E-29 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 156 | 250 | 4.9E-10 | IPR015943 |
| SMART | SM00320 | WD40_4 | 234 | 284 | 190.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 291 | 328 | 0.97 | IPR001680 |
| SMART | SM00320 | WD40_4 | 331 | 368 | 0.0094 | IPR001680 |
| SMART | SM00320 | WD40_4 | 377 | 418 | 14.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 161 | 200 | 3.8E-4 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 168 | 200 | 10.495596 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 168 | 209 | 13.783434 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 298 | 331 | 8.808332 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 338 | 367 | 8.971213 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 298 | 337 | 10.976305 | IPR001680 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 74 | 100 | 10.830892 | IPR000571 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 315 | 329 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 187 | 201 | 7.5E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 315 | 329 | 7.5E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 355 | 369 | 7.5E-7 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 111 | 151 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 111 | 132 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25440.1 | zinc finger WD40 repeat protein 1. | 4.44E-50 |
| RefSeq | XP_004987175.1 | zinc finger CCCH domain-containing protein 48 [Setaria italica] | 1.69E-184 |
| Q0DYP5 | Zinc finger CCCH domain-containing protein 17 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0677700 PE=2 SV=2 | 2.05E-55 | |
| TrEMBL | K4AKC3 | C3H1-type domain-containing protein OS=Setaria italica OX=4555 GN=101756504 PE=4 SV=1 | 3.82E-183 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology