Basic Information
Locus ID:
CH01.5518
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
CHY zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH01 | 54636577 | 54638957 | - | CH01.5518 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.99 | 30,162.45 Da | 59.87 | 58.09 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14599 | Zinc-ribbon | 195 | 253 | 1.7E-24 | IPR039512 |
| Pfam | PF05495 | CHY zinc finger | 12 | 93 | 1.4E-17 | IPR008913 |
| Pfam | PF13445 | RING-type zinc-finger | 148 | 188 | 1.0E-6 | IPR027370 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 84 | 140 | 1.44E-18 | IPR037275 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 7 | 82 | 1.19E-16 | IPR037274 |
| SUPERFAMILY | SSF57850 | RING/U-box | 146 | 193 | 2.44E-9 | - |
| Gene3D | G3DSA:2.20.28.10 | - | 219 | 259 | 3.8E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 132 | 214 | 4.5E-10 | IPR013083 |
| SMART | SM00184 | ring_2 | 148 | 190 | 3.0E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 148 | 190 | 11.795887 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 5 | 81 | 25.114401 | IPR008913 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 83 | 147 | 33.124836 | IPR017921 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G22920.1 | CHY-type/CTCHY-type/RING-type Zinc finger protein. | 9.48E-128 |
| RefSeq | XP_012698586.1 | E3 ubiquitin-protein ligase RZFP34 [Setaria italica] | 2.68E-180 |
| Q9FFB6 | E3 ubiquitin-protein ligase RZFP34 OS=Arabidopsis thaliana OX=3702 GN=RZPF34 PE=1 SV=1 | 9.1E-127 | |
| TrEMBL | K4ADU3 | CHY-type domain-containing protein OS=Setaria italica OX=4555 GN=101768671 PE=4 SV=1 | 6.06E-179 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology