Basic Information
Locus ID:
CH01.5436
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Belongs to the plant LTP family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH01 | 53918380 | 53924439 | - | CH01.5436 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.65 | 95,352.01 Da | 41.13 | 95.76 | 0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04457 | S1_S28E | 348 | 398 | 3.47297E-27 | IPR000289 |
| CDD | cd00010 | AAI_LTSS | 40 | 102 | 6.26479E-22 | - |
| Pfam | PF01200 | Ribosomal protein S28e | 346 | 398 | 2.0E-23 | IPR000289 |
| Pfam | PF14368 | Probable lipid transfer | 13 | 111 | 6.8E-15 | IPR016140 |
| Pfam | PF03478 | Protein of unknown function (DUF295) | 746 | 778 | 7.1E-8 | IPR005174 |
| SUPERFAMILY | SSF47699 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin | 31 | 109 | 4.18E-16 | IPR036312 |
| SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | 343 | 399 | 8.57E-20 | IPR012340 |
| Gene3D | G3DSA:1.10.110.10 | - | 30 | 108 | 6.5E-15 | IPR036312 |
| Gene3D | G3DSA:2.40.50.140 | - | 341 | 401 | 6.4E-28 | - |
| SMART | SM00499 | aai_6 | 33 | 111 | 1.4E-5 | IPR016140 |
| PRINTS | PR00382 | Plant phospholipid transfer protein signature | 32 | 48 | 5.6E-6 | IPR000528 |
| PRINTS | PR00382 | Plant phospholipid transfer protein signature | 53 | 67 | 5.6E-6 | IPR000528 |
| PRINTS | PR00382 | Plant phospholipid transfer protein signature | 88 | 105 | 5.6E-6 | IPR000528 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 138 | 153 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 129 | 153 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G44300.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein. | 7.4E-35 |
| RefSeq | XP_044397638.1 | uncharacterized protein LOC123121685 [Triticum aestivum] | 6.92E-193 |
| O64865 | Non-specific lipid transfer protein GPI-anchored 14 OS=Arabidopsis thaliana OX=3702 GN=LTPG14 PE=2 SV=1 | 7.15E-34 | |
| TrEMBL | A0A835C006 | DUF295 domain-containing protein OS=Digitaria exilis OX=1010633 GN=HU200_025772 PE=4 SV=1 | 1.09E-227 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology