Basic Information
Locus ID:
CH01.5273
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
N-terminal cysteine-rich region of Transmembrane protein 135
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH01 | 52576719 | 52584874 | + | CH01.5273 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.96 | 94,564.02 Da | 44.56 | 89.98 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02663 | Peptidase_C19G | 507 | 843 | 0.0 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 506 | 842 | 5.0E-60 | IPR001394 |
| Pfam | PF15982 | N-terminal cysteine-rich region of Transmembrane protein 135 | 276 | 396 | 3.1E-7 | IPR031926 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 504 | 843 | 7.46E-91 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 487 | 844 | 7.5E-107 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 506 | 845 | 61.332481 | IPR028889 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 776 | 794 | - | IPR018200 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 507 | 522 | - | IPR018200 |
| Coils | Coil | Coil | 608 | 628 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G34630.1 | 1.42E-227 | |
| RefSeq | XP_025792474.1 | uncharacterized protein LOC112873680 isoform X1 [Panicum hallii] | 1.0999999999998E-312 |
| O24454 | Ubiquitin carboxyl-terminal hydrolase 3 OS=Arabidopsis thaliana OX=3702 GN=UBP3 PE=1 SV=1 | 1.76E-207 | |
| TrEMBL | A0A3L6SCU9 | Ubiquitin carboxyl-terminal hydrolase OS=Panicum miliaceum OX=4540 GN=C2845_PM02G34950 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg22634 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_23324 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah023916 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_1g009120 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg29305, Sbi_jg3542 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg6419 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00000874 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl11781, Sgl11939, Sgl17270 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000014917, gene:ENSEOMG00000035362 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0012190, CQ.Regalona.r1.1BG0014150 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30040920 |
| Apiaceae | Apium graveolens | 1 | Ag4G02742 |
| Arecaceae | Cocos nucifera | 3 | COCNU_03G006990, COCNU_03G007000, scaffold002246G000040 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103701762 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.1811.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri2G23577 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G34630.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10001817m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g29750.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB03g036200.2N, BniB04g052740.2N, BniB04g052760.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G1346 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G1448 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno11g07500 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0292s00011.v1.0, Dusal.0292s00012.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g27810 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-12377, nbisL1-mrna-5229 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG06.1044 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G15340 |
| Poaceae | Echinochloa crus-galli | 4 | AH01.4699, CH01.3771, CH01.5273, Contig181.119 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_3AG0236840, gene-QOZ80_3AG0249930 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0406920.1 |
| Poaceae | Oryza coarctata | 2 | Oco05G005030, Oco06G005200 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g09090.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G314500, gene-BS78_01G452400 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0101432, Pt_Chr0101469, Pt_Chr0401371 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G026040, Chr04G002340, Chr07G008900, Chr12G013330 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G510200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG056060, gene_TRIDC4BG052220 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G406900.1, TraesCS4B02G306200.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb006880_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-2656, nbis-gene-6613 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g10178, Zma_g1898 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.1786, evm.TU.LG06.588 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g15570 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_7_RagTag.997 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-18849 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-13927 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-6822 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000002l.757 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00010811 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-8215 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-9945 |
| Salicaceae | Populus euphratica | 2 | populus_peu32276, populus_peu32277 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132609701, gene-LOC132627510 |
| Solanaceae | Solanum chilense | 1 | SOLCI003725500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107015548 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.9739_chr06_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC09G2465 |
| Zosteraceae | Zostera marina | 1 | Zosma03g34060.v3.1 |