Basic Information
Locus ID:
CH01.5160
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Short Name:
DRM2
Description:
C-5 cytosine-specific DNA methylase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH01 | 51749017 | 51753444 | - | CH01.5160 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.17 | 71,405.86 Da | 39.48 | 77.97 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 526 | 641 | 1.5E-9 | IPR001525 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 526 | 641 | 5.2E-19 | IPR029063 |
| SUPERFAMILY | SSF46934 | UBA-like | 201 | 249 | 4.08E-5 | IPR009060 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 330 | 523 | 8.31E-21 | IPR029063 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 323 | 410 | 2.3E-5 | - |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 517 | 649 | 6.9E-27 | - |
| ProSiteProfiles | PS51680 | SAM-dependent methyltransferase DRM-type domain profile. | 323 | 649 | 127.672829 | IPR030380 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 220 | 262 | 8.643164 | IPR015940 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 526 | 649 | 20.883224 | IPR001525 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 192 | 211 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 270 | 297 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 270 | 307 | - | - |
Gene Ontology
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G14620.1 | domains rearranged methyltransferase 2. A putative DNA methyltransferase with rearranged catalytic domains; similar to mammalian DNMT3 methyltransferases; contains UBA domains. The 3'-end proximal part of the gene coding region is highly methylated at both adenine and cytosine residues. | 4.97E-164 |
| RefSeq | XP_025798415.1 | DNA (cytosine-5)-methyltransferase DRM2-like isoform X1 [Panicum hallii] | 0 |
| Q10SU5 | DNA (cytosine-5)-methyltransferase DRM2 OS=Oryza sativa subsp. japonica OX=39947 GN=DRM2 PE=1 SV=1 | 1.63E-240 | |
| TrEMBL | A0A2S3IT30 | SAM-dependent MTase DRM-type domain-containing protein OS=Panicum hallii OX=206008 GN=PAHAL_9G555700 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology