Basic Information
Locus ID:
CH01.5113
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Belongs to the glycosyl hydrolase 17 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH01 | 51306016 | 51309474 | - | CH01.5113 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.37 | 53,454.13 Da | 32.86 | 90.76 | 0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07983 | X8 domain | 364 | 434 | 4.5E-17 | IPR012946 |
| Pfam | PF00332 | Glycosyl hydrolases family 17 | 26 | 346 | 3.5E-80 | IPR000490 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 26 | 347 | 7.04E-86 | IPR017853 |
| Gene3D | G3DSA:1.20.58.1040 | - | 357 | 455 | 5.2E-9 | - |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 25 | 352 | 7.5E-115 | - |
| SMART | SM00768 | X8_cls | 363 | 448 | 3.3E-48 | IPR012946 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G01630.1 | O-Glycosyl hydrolases family 17 protein. | 1.24E-234 |
| RefSeq | XP_034576329.1 | glucan endo-1,3-beta-glucosidase 3 [Setaria viridis] | 0 |
| Q9ZU91 | Glucan endo-1,3-beta-glucosidase 3 OS=Arabidopsis thaliana OX=3702 GN=At2g01630 PE=2 SV=2 | 1.19E-233 | |
| TrEMBL | A0A4U6TJ79 | X8 domain-containing protein OS=Setaria viridis OX=4556 GN=SEVIR_9G491300v2 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology