Basic Information
Locus ID:
CH01.5004
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
U-box domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH01 | 50313304 | 50314644 | + | CH01.5004 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.46 | 47,174.26 Da | 43.09 | 104.48 | 0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 35 | 76 | 4.96233E-23 | - |
| Pfam | PF04564 | U-box domain | 31 | 102 | 6.9E-22 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 22 | 105 | 3.65E-30 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 215 | 423 | 4.74E-14 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 134 | 423 | 2.0E-11 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 30 | 103 | 1.6E-30 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 34 | 97 | 2.0E-32 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 30 | 104 | 39.011303 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G37490.1 | ARM repeat superfamily protein. | 1.43E-88 |
| RefSeq | XP_004985053.1 | U-box domain-containing protein 21 [Setaria italica] | 5.61E-279 |
| Q5PNY6 | U-box domain-containing protein 21 OS=Arabidopsis thaliana OX=3702 GN=PUB21 PE=2 SV=1 | 1.38E-87 | |
| TrEMBL | K4AA08 | RING-type E3 ubiquitin transferase OS=Setaria italica OX=4555 GN=101783635 PE=4 SV=1 | 1.27E-277 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology